| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0335 |
|---|
| Symbol | |
|---|
| ID | 4578816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 318371 |
|---|
| End bp | 319441 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639767650 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_914145 |
|---|
| Protein GI | 119383089 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.224886 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCTCA AGCTCATCAA GCGTGGTGAA ATCTGGTATA TCCGCGGCAC CGTCGCTGGA
CAGCGCGTTT ACGAAAGCAC TCGAATTGGC GACAAGCGCC AGGCGGAAAT CCTCCGCGCG
CGACGCGAAG CCGAGATCAT CGAACGTCGT GCATATGGCA AGGCCGTAAC CTATACCTTC
GCCGAGGCCG CGCTGGCCTA TATGGAATCG GGTGGCGAGG GGAAGTATCT GGCGCGGATC
ATCAAGCACT TCGGCCCGCG CTGGCGCCTG GTCGATACCG ACAACGATGC GGTCAGCCGC
GCGGCGGCCG CGCTCTACCC GGATGCGGGC CCGGCGACGA TCAATCGCCA GCTCATCACA
CCGATCAGCG CCGTCTACCG GCTGGCAGCC GAGGATGGCA AGGTTCCAGA TCGCAGGTTC
AGGCGCCGCA AGGAGCCCAG GACCCGGTTG CGCTGGTTGA CACCGGAGGA GGTCGAGGCC
CTGCTGGCGG CCTGCGACAG GCGGCTCCTG CCAATCGTGG CGTTCCTGCT CGGGACAGGC
TGCCGGACCG GCGAGGCATT GGGGCTGACC GTGCAGCACC TGCATCTCGA CACCTGCGAG
GCCTATGTCG GCGTGACCAA GAACGGCGAC GGCAAGATGG TCCAATACCC CGGCAGGACG
CGCCGCATCA TGGTCGCCAG CGGACTACCC GAGGCCGGCG CGGTGTTTCG CACGCCGAAG
GGCAAGCCCT ATCGCCTCAC CAATTCCAGC GGATCGCGCC TCGGCGGTCA GATCAAGGGC
GCATTCGACA AGGCGCGGGA TGCAGCCGGA CTCGGCGAGG ATGTGACCCC GCACACGCTG
CGCCACACCT TTGCGACCTG GCACTATGCG GTCAACCGTG ACCTGATCCT GCTGATGGAA
CGCGGCGGCT GGCGCAAGCC GGATATGGCG ATCGGCTACA CCAAGCTCGC GCCCGCAGAC
CTGCCGCGTC GGCTGTTCGA GCACGGATGG GACTTTCGTG CAAACTACGT GCATGACGCT
GCATTGCCCG ATGATTTCGG GAAGAAAATC AAGATCATGC GGGAAGCTTA A
|
|---|
| Protein sequence | MPLKLIKRGE IWYIRGTVAG QRVYESTRIG DKRQAEILRA RREAEIIERR AYGKAVTYTF
AEAALAYMES GGEGKYLARI IKHFGPRWRL VDTDNDAVSR AAAALYPDAG PATINRQLIT
PISAVYRLAA EDGKVPDRRF RRRKEPRTRL RWLTPEEVEA LLAACDRRLL PIVAFLLGTG
CRTGEALGLT VQHLHLDTCE AYVGVTKNGD GKMVQYPGRT RRIMVASGLP EAGAVFRTPK
GKPYRLTNSS GSRLGGQIKG AFDKARDAAG LGEDVTPHTL RHTFATWHYA VNRDLILLME
RGGWRKPDMA IGYTKLAPAD LPRRLFEHGW DFRANYVHDA ALPDDFGKKI KIMREA
|
|---|
| |