| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0189 |
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| Symbol | |
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| ID | 4578827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 171675 |
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| End bp | 173552 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639767506 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_914001 |
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| Protein GI | 119382945 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGAAC TGCTTGCCTC CAACCTCGCC CCGATCATGT TCCTGTCGCT GATCGGGATA
CTGCTTCTGG GCTATCCGGT CGCCTTCTCG CTGGCCGCGA ACGGGCTCTT GTTCTTCTTC
GTGGCGGTCG AACTGTCACC CTATGCGCCC GGCACCATCG CGCTAAGCTG GAACCTGCTC
GTGGCGCTGC CTGACCGCGT GTTCAGCATC ATGTCGAACG AGGTGCTGCT GGCGGTTCCG
TTCTTCACCT TCATGGGGAT CGTACTGCAA CGCTCGGGCA TGGCCGAGGA TCTGCTGGAA
ACCTTCGGCC AGTTCTTCGG ATCGGTGCGC GGGGGCGTCG CCTATGCGGT GGTGTTCGTC
GGCACGCTGC TGGCGGCGAC CACCGGCGTC GTGGCCGCAT CGGTCATCGC CATGGGCATG
ATCTCGCTGC CGGTGATGAT GCGCTATGGC TATGACCGGC GGGTCGCGTC GGGGACGATC
ATGGCCTCGG GGACGCTGGC ACAGATCCTG CCGCCCTCGA CCATCCTGAT CGTGCTGGCC
GACCAGCTGG GCACCTCGGT CGGCGACATG TACACGGTGG CCTTCCTGCC CTCGCTGATG
CTGACGCTCA GCTTCATGCT GTTCATCCTG CTGGTCAGCA TCTTCCGTCC GTCCTATGTT
CCCGCCCTGC CGCCCGAGGC GCTGCTCTAT CGCGAACCGA ACGGCACGCG GGGCGTCTGG
CAGGTGCTGG CGCTGTTCGT CGTCTCGGGG ATCATCGCCT CGCTGACGGT GCGTGCGTCG
GGGATGGAGA AGACCATCGA CGTGGTGATC TTTACCCTGT GCGGCCTGTC CATCGCGGCG
CTGGTCATCG CGCTGATGTC GCGGCTGCTG GGGCGCGCGG CGCTGGTGGC GGGCGGCGTG
CTTGCCCTTG GCTTCGCCGC GCTGGCGATG ACCCGCGATG CAGGCTCGCT GGCGGCCACG
CTGGCCTGGG CGGCCAGCGC CGTCTGCGCC TATGTCGCGC TGCACGGCGC CTCGGCACGC
GGCGCGCGCA CCCGCCTCAT CTCGGCGATC GCCGAGCGGG TCGCCTTCGT CCTGGTCCCG
CCCGTGCTGC TGATCTTCCT GGTGCTGGGG ACGATCTTCA TCGGCCTGGC CACGCCGGTC
GAGGCCGGGG CGATGGGCGC GGTGGGATCG GTGGTCCTGG CCCTGGCCAA GCGGCTGGCC
GACCGGCGGC CCGACCGGCT GAACCTTGCG ATGATGACCC AGGCGACCTA TTCCACGGCC
AAGCTCTGCG CCTTCATCCT GTTCATCCTG ATCGGGGCGC GGGTCTTCGC GCTGACCTTC
TTCGGGATCA ACGGCCATCT CTGGGTCGAA CACCTTCTGA CCGGGCTTCC CGGCGGCCAG
CGCGGGTTCA TGATCTTCAC CGTCGTGGTG ATCTTCGTCC TGGGATGTTT CCTCGACTTC
TTCGAGATCG CCTTCATCGC CATCCCGCTT CTGCTGGTCC CGGCGATCAC CCTGGGGGTC
GATCCGCTGT GGTTGGGCCT GGTGATCGCG ATCACGCTGC AAACCTCGTT CCTGACGCCG
CCGCTTGGCT TTTCACTGTT CTTCCTGCGC TCGATCGCGC CCAAGGCCGC CTACAAGGAC
GAGATCAGCG GCAAGATGAT CGACGGCGTG TCCACCCGGC AGATCTATCT GGGCGGCATA
CCTTTCGTCA TCATCCAGTT GCTGCTGGTG ATCGTCGTGC TGTTCGCGCC CGAGATCTTC
ATGGGCGTGG GCGGGCAAGC CCCGGTCATG GACATGGAGG ACGCGATGCG CACGCTCGAG
GGCTTTACCA TCGACATCGA CCCGACGGGA GGTATAGCTG TGCCCCAGAT CGACCTGACC
TTCCCCAGCG GAAACTGA
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| Protein sequence | MFELLASNLA PIMFLSLIGI LLLGYPVAFS LAANGLLFFF VAVELSPYAP GTIALSWNLL
VALPDRVFSI MSNEVLLAVP FFTFMGIVLQ RSGMAEDLLE TFGQFFGSVR GGVAYAVVFV
GTLLAATTGV VAASVIAMGM ISLPVMMRYG YDRRVASGTI MASGTLAQIL PPSTILIVLA
DQLGTSVGDM YTVAFLPSLM LTLSFMLFIL LVSIFRPSYV PALPPEALLY REPNGTRGVW
QVLALFVVSG IIASLTVRAS GMEKTIDVVI FTLCGLSIAA LVIALMSRLL GRAALVAGGV
LALGFAALAM TRDAGSLAAT LAWAASAVCA YVALHGASAR GARTRLISAI AERVAFVLVP
PVLLIFLVLG TIFIGLATPV EAGAMGAVGS VVLALAKRLA DRRPDRLNLA MMTQATYSTA
KLCAFILFIL IGARVFALTF FGINGHLWVE HLLTGLPGGQ RGFMIFTVVV IFVLGCFLDF
FEIAFIAIPL LLVPAITLGV DPLWLGLVIA ITLQTSFLTP PLGFSLFFLR SIAPKAAYKD
EISGKMIDGV STRQIYLGGI PFVIIQLLLV IVVLFAPEIF MGVGGQAPVM DMEDAMRTLE
GFTIDIDPTG GIAVPQIDLT FPSGN
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