| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0175 |
|---|
| Symbol | |
|---|
| ID | 4579728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 156769 |
|---|
| End bp | 157950 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639767492 |
|---|
| Product | putative ABC transporter binding protein |
|---|
| Protein accession | YP_913987 |
|---|
| Protein GI | 119382931 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.673441 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTG CAACCGCCTT TCTGGCGACC GCGCTGATGG CGACGACCGC CCATGCGCAG
GAACCGATCC GCATCGGCTT CATCACCACG CTGACCACGC CGGCCGCCGC CATCGGCAAC
GACATGGTGG ATGCGGTCAA CCTGGCCATC GACCATGTGG GCGGCGAGAT CGCCGGCCAC
CCGATCCAGG TGATCTTCGA GGATGACGGG CTGCAACCCG AACTGGGCCG GCAGAAGGCC
GAAAAGCTGG TGCGCCAGGA AAAGGTCGAT GTCGTGTCGG GCTTCATCTG GTCCAACGTG
CTGATGGCCG CGCGCCGGAC CGTGCTGGAT TCGGATACCT TCCTGATCAG CACCAATGCC
GGGCCTTCCG ATCTGGCGGG CAAGCTGTGC AGCCCGGATT TCTTTTCGCT GCGCGGGCAG
AACGACGTGG TGCCGATGGC GCTTGGCCAG ATCATGAACG AACGCGGCGT CGAGAAACTC
TATGTCATGA CGCCCAATTA CAGCGCCGGC ACCGACATGG CGGCGGGCGT CGAGAACACC
TTCGAGGGCG AGGTCGTGGG CCGCGACTTC ACCAAATGGG GCGAGGATCC GCAGCTGGAT
TTCTCGGCCG AGCTGGCCAA GGTCGGCGCC TCGGGGGCGG ATGCGCTGTT CGCCTTCTAT
CCGGGCCGGG CCGCGATCTT CGCGCGCCAG TTCGAACAGT CGGGACTGGC CGACCGGGTG
AAGCTCTATA CCGTCTATAC CTTCGACCAG ATTGCCCTGC CCACCCTGCA AGAGGCGGGG
ATCGATGTGG CGCTTGGCTC GGTCACGGTG GACTATTGGT CGCCCGACAT CGACACGCCC
GCCAACGTGA AGTTCGTCGA GGATTTCAAG GAACGCTATG GCCGGCTGCC GTCGAACTAT
GCCGCGGCGG CCTATGACCT GATCCCCTAT CTGAAGGCGG CGGTGGAACA GTCGGGCGGC
GACATCAAGG ACCGCGACGC GGTGCGCGAG GCGCTGATCC GGGCCGATTA CGAATCGGTG
CGCGGTCGCT ACAGCCTGGC GCGCAACCAC TTCCCCATCG ACAACTACCG CAGCCTTGAA
ATCGCGCCCG ACGCCAATGG CGCGTGGAGC ATGCGCTCGG ACGGGCTGGA GCTGGCGGGG
CTGGTCGATC CCTATGTCGA TCAGTGCGGC AATGACAGCT AG
|
|---|
| Protein sequence | MKLATAFLAT ALMATTAHAQ EPIRIGFITT LTTPAAAIGN DMVDAVNLAI DHVGGEIAGH
PIQVIFEDDG LQPELGRQKA EKLVRQEKVD VVSGFIWSNV LMAARRTVLD SDTFLISTNA
GPSDLAGKLC SPDFFSLRGQ NDVVPMALGQ IMNERGVEKL YVMTPNYSAG TDMAAGVENT
FEGEVVGRDF TKWGEDPQLD FSAELAKVGA SGADALFAFY PGRAAIFARQ FEQSGLADRV
KLYTVYTFDQ IALPTLQEAG IDVALGSVTV DYWSPDIDTP ANVKFVEDFK ERYGRLPSNY
AAAAYDLIPY LKAAVEQSGG DIKDRDAVRE ALIRADYESV RGRYSLARNH FPIDNYRSLE
IAPDANGAWS MRSDGLELAG LVDPYVDQCG NDS
|
|---|
| |