Gene Pden_0161 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_0161 
Symbol 
ID4579715 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp145138 
End bp146280 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content71% 
IMG OID639767479 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_913974 
Protein GI119382918 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCTCT GGATAGCAGC CCTGGCGCTG GTCGCAATGA TGGGGACAGG TTTTTTTCTT 
GCCTTCCCCC TTCCGGGATC GTCCAATGGC GCGTCTCGGG TCATCGACGC CGCGACAGGG
GCACATGCCG GGGTCCCGCG GCAGCATCGC GCGATGCAGC TGCTGCCGCG CGAGGTGCTT
CGCGTCGCCC CCGCAACCAT TGCCGAACGT CTGACCGTCA GCGGCGAGGT CCGGCCGGTG
CAGCGCGTCA TCCTGCGCGC TCAGTCGGGC GGTGTCGTGG CCGAGCTTGG CGCGCGCGAG
GGCGAGGCGG TCCGGGCCGG GGATATGCTG GTCCGCTTCG ACACCGAAGA ACTCGCGGCC
ACCCTGGCGC TGCGGCAAAG CGAGGTCGAG GCGACCGAGG CCCGGCTTCG CTTCGCGCGC
CAGGCGCTGG AGCGGATCGA GCGCCTGGCC GAACGCACTG TCGCCACGCA GGAACAGCTT
GACCAGGCGC GGCGCGAATC CGCTGTCCTG CAGGCGCAGC TCGACGGTCT CAGGGCCCAG
GCCGGGATCG CGCGGGCGGC CTTGCGCGAT GCCGAGATCC GCGCGCCCTT CGACGGGGTG
GTCGCCAGCC GCAGCGTGGA TGTCGGGGAA CGCGCGAGCG CCGAGGCCGA GCTGATGACG
CTGGTCGATC CGACCAGACT GGAAGCACGG GTTCTCATCG CCACGCGCGA CGTGCCCCGG
ATCGCGCCCG GTCAGGCCGC AGAACTGCGG ATCGACGGGC TGGAAGGCGA GACGATCGAG
GGCTCGGTCC TGCGCATCAA TCCCGTCGCG AATGACGGCT CGCGCTTCAT CTCCGTCCAT
ATCGGGCTGG ACGACCCGGA CGGGCGGCTG CGCGGCGGGA TGTTCGCAAC CGGCACGATC
CTTGTCGAGG AACGCGCCGA TGTGCTGGCC CTGCCCGCGA CCGCGCTGCG CGAGGACGGG
GACGGGGCCT ATGTGCTGCG GCTCGCGGAG GGGCAGATCG AGCGCCGGCC CGTGGTGACC
GGCGCCGCCT GGAGCGGCGG ACGGATCGAG ATCCGCGACG GGATCGCATC GGGCGACACC
ATCCTCATCG CCCCGCTCCC GGGTCTCGGC GAGGGCGTGC TGGCCGAAGT CTCGGGGGGC
TGA
 
Protein sequence
MKLWIAALAL VAMMGTGFFL AFPLPGSSNG ASRVIDAATG AHAGVPRQHR AMQLLPREVL 
RVAPATIAER LTVSGEVRPV QRVILRAQSG GVVAELGARE GEAVRAGDML VRFDTEELAA
TLALRQSEVE ATEARLRFAR QALERIERLA ERTVATQEQL DQARRESAVL QAQLDGLRAQ
AGIARAALRD AEIRAPFDGV VASRSVDVGE RASAEAELMT LVDPTRLEAR VLIATRDVPR
IAPGQAAELR IDGLEGETIE GSVLRINPVA NDGSRFISVH IGLDDPDGRL RGGMFATGTI
LVEERADVLA LPATALREDG DGAYVLRLAE GQIERRPVVT GAAWSGGRIE IRDGIASGDT
ILIAPLPGLG EGVLAEVSGG