| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0153 |
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| Symbol | |
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| ID | 4580177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 135898 |
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| End bp | 138516 |
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| Gene Length | 2619 bp |
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| Protein Length | 872 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639767471 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_913966 |
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| Protein GI | 119382910 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAATC TCGCCGAGTA TCGCCGCAAC GCTTCCCGCC TCGCCGATTA CCTGCCCTGG
GCGGCGCTGA TCGCGCCGGG CGTGGTGCTG AACAAGGACG GTTCGTTCCA GCGCACGGCG
AAGTTCCGCG GACCGGATCT GGATTCCGCC GTCGCCGCCG AACTGGTCGC GGTGGCGGGG
CGGCTCAACA ATGCTTTCCG CCGCCTGGGT TCCGGCTGGG CGATCTTCGT CGAGGCGCAG
CGTCGCGAGG ATTCCAGCTA TCCCGAGAGC CGCTTCCCCG ATCCGGCCTC GGCGCTGGTC
GATGCCGAGC GGAAAGCCGA TTTCGAACAG GCGGGCAGCC ATTTCGTCTC GGATTATTTT
CTCACCCTGC TCTGGCTGCC CCCCGCCGAG GAGGCGGCCC GCGCCGAGAG TTGGCTCTAC
GAAGGTCGCG AGACATCCGG CATGAACCCG TGGGAACTGC TGCGCGGCTT TATCGACCGC
AGCGACCGGG TGTTGGCGCT GCTGGACGGC TTCATGCCGG AATGCGCCTG GCTCGACGAT
GGCGAGACCC TGACCTACCT GCATTCGACC ATTTCCACAA ACCGGCAGCG TGTTCGCGTG
CCCGAGGTGC CGATGCATCT CGACGCCCTG CTCTCCGACC AGTCGCTGAC CGGCGGGCTG
GAGCCACGGT TGGGCAAGCA GCACTTGCGG GTGCTGACCA TCACCGGCTT TCCCACCGCC
ACCACGCCCG GGATTCTCGA CGAGTTGAAC CGCATCGCCT TTCCCTACCG TTGGTCGACG
CGGGCCATCC TCATCGACAA GACGGACGCC ACGCGACTGC TGACCAGGAT CCGCCGGCAG
TGGTTCGCCA AGCGCAAGAG CATCGCCGCG ATCCTGAAGG AGGTGATGAC CAGCGAGCCC
TCGGCGCTGG TCGACACCGA TGCTGCCAAC AAGGCGAATG ATGCCGATCT GGCGCTGCAG
GAACTCGGTG CCGACGTCGC CGGCATGGGT TATGTCACCG CGACGATCAC CGTCTGGGAC
GAAGACGCCC GCATCGCCGA CGAGAAGCTG CGGCTGGTCG AGAAGATCGT GCAGGGACGC
GACTTCACCG TGATGGTGGA GACGGTCAAT GCGGTCGACG CCTGGCTCGG CAGCTTACCG
GGACACGCCT ATGCCAATGT GCGCCAGCCG CCGGTCTCGA CGCTGAACCT CGCCCATATG
ATCCCGCTCT CGGCCGTCTG GGCCGGCGAC GAACGGGACA CGCATTTCGA TGCGCCGCCG
CTCTTCTATG GCAAAACCGA AGGCGCGACG CCGTTCCGCT TCTCGCTGCA TGTCGGCGAT
GTCGGCCATA CGCTGGTGGT CGGGCCGACC GGCGCGGGCA AATCCGTGCT GCTGGCGCTG
ATGGCGCTGC AGTTCCGCCG CTACGAGGGA CCGCAGGTCT TCGCCTTCGA TTTCGGCGGC
AGCATTCGCG CTGTGGCGCT GGCCATGGGC GGCGACTGGC ACGATCTCGG CGGCGGGCTG
AGCGAGGGTG ACGAGGATTC GGTCTCGCTG CAGCCGCTGG CTCGTATCCA TGAGTCCGCC
GAACGCGCCT GGGCCGCCGA CTGGATTGCG GCCATCCTCG GCCGCGAGGG GATCGCCGTC
ACCCCGGAGG TCAAGGACCA TCTCTGGACG GCGCTGACCT CGCTGGCCTC TGCGCCAGTC
GGAGAGCGCA CCATCACCGG CCTCGCGGTC TTGCTGCAAT CCAATGAGCT GAAGCAGGCG
CTGCGCCCCT ATTGCATCGG CGGCCCTTAT GGCCGGCTGC TCGATGCCGA GGCGGAACAT
CTCGGCTCGG CCTCGGTACA AGCCTTCGAG ATCGAAGGAC TGGTCGGCAC CGGCGCTGCA
CCGGCGGTGC TGTCCTATCT GTTCCACCGC ATCGGCGACC GGCTCGACGG CCGCCCGACG
CTGCTGATCA TCGACGAGGG CTGGCTGGCA CTGGACGACG AGGGATTTTC CGGACAGCTT
CGCGAATGGC TGAAGACGCT GCGGAAGAAG AACGCCTCGG TGATCTTCGC CACGCAAAGT
CTCAGCGACA TCGACAACTC TGCCATCGCG CCGGCGATCA TCGAGAGCTG CCCGACCCGG
CTGCTGCTGC CCAACGAGCG CGCCATCGAG CCGCAGATCA CCGCCATCTA TCGCCGCTTC
GGCCTCAACG ACCGCCAGAT CGAGATTCTG GCGCGGGCCA CGCCGAAACG GGACTATTAC
TGCCAGTCCC GACGCGGCAA CCGGCTCTTC GAGCTGGGGC TTTCCGAGGT CGGCCTCGCG
CTTTGCGCGG TATCGTCCAA GTCCGATCAG GCAAGGATCG CGGCGATCCT CGCCGAACAC
GGGCGCGAGG GGTTTCTGGC CGCCTGGCTG CGCGACCGCA GCGTCGATTG GGCCGCCGAG
CTGATTCCGG ATCTTGCTAA TCTGGCGCCG GAGGACGCCG ACATGCTCGA ATCTGTACTG
TTCGGTTCAG AAACAGCACG TGCTCAGTGC GGCATGGCAC CTGTCGATGT CGGGTCCCTT
GACCGGGAGA CCGGGCCTGA CGATGGCGAG ATCGACCTCG ACGGCACCAA AGCCGCATCC
ATCCCCGCAG AAAGAGAAGA AGAGGAGACC GCGCCATGA
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| Protein sequence | MMNLAEYRRN ASRLADYLPW AALIAPGVVL NKDGSFQRTA KFRGPDLDSA VAAELVAVAG
RLNNAFRRLG SGWAIFVEAQ RREDSSYPES RFPDPASALV DAERKADFEQ AGSHFVSDYF
LTLLWLPPAE EAARAESWLY EGRETSGMNP WELLRGFIDR SDRVLALLDG FMPECAWLDD
GETLTYLHST ISTNRQRVRV PEVPMHLDAL LSDQSLTGGL EPRLGKQHLR VLTITGFPTA
TTPGILDELN RIAFPYRWST RAILIDKTDA TRLLTRIRRQ WFAKRKSIAA ILKEVMTSEP
SALVDTDAAN KANDADLALQ ELGADVAGMG YVTATITVWD EDARIADEKL RLVEKIVQGR
DFTVMVETVN AVDAWLGSLP GHAYANVRQP PVSTLNLAHM IPLSAVWAGD ERDTHFDAPP
LFYGKTEGAT PFRFSLHVGD VGHTLVVGPT GAGKSVLLAL MALQFRRYEG PQVFAFDFGG
SIRAVALAMG GDWHDLGGGL SEGDEDSVSL QPLARIHESA ERAWAADWIA AILGREGIAV
TPEVKDHLWT ALTSLASAPV GERTITGLAV LLQSNELKQA LRPYCIGGPY GRLLDAEAEH
LGSASVQAFE IEGLVGTGAA PAVLSYLFHR IGDRLDGRPT LLIIDEGWLA LDDEGFSGQL
REWLKTLRKK NASVIFATQS LSDIDNSAIA PAIIESCPTR LLLPNERAIE PQITAIYRRF
GLNDRQIEIL ARATPKRDYY CQSRRGNRLF ELGLSEVGLA LCAVSSKSDQ ARIAAILAEH
GREGFLAAWL RDRSVDWAAE LIPDLANLAP EDADMLESVL FGSETARAQC GMAPVDVGSL
DRETGPDDGE IDLDGTKAAS IPAEREEEET AP
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