Gene Pden_0115 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_0115 
Symbol 
ID4580893 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp107337 
End bp108014 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content63% 
IMG OID639767433 
ProductyecA family protein 
Protein accessionYP_913928 
Protein GI119382872 
COG category[R] General function prediction only 
COG ID[COG3318] Predicted metal-binding protein related to the C-terminal domain of SecA 
TIGRFAM ID[TIGR02292] yecA family protein 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.410021 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00793411 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGGCAGAT CGGATCGGGA CCTCGATCAC CTTCACGAAC TCCTGTGGGC CCTGCCCCAG 
GAAAACCATC CGATGAGCCT AAGCGAGCTC GACGGCTATG TGACCGGCAT CCTGTCATGT
CCCGATCTCA TCCCGCCCTC CGAATGGCTC CTCCATGTCT GGGGAGAAAC CGGCGATGCC
CGGTTCCCCG ACCTGGCAAC GGCAGAAGCA ACAATCTCGG CGGTGATGGC GCATTACAAT
GCCATTGCCT CGGAGATCGC ACGAAGCCCA TGGCTCGAAC CGATCTACGA GGTGGACCCG
AACAGCGACG AAACGCTCTG GGAACCCTGG GTGGATGGCT TCACCCGCGC TTTGCGCCTG
CGCCCCGAGG CCTGGCAGGC GGTGCTCGAA CAGGCGGATG AGGAAACGCG CTCGGCCCTG
ATCTTCCTGA TGGCCCTGCA GGACATCAAC GAAGGGACCA GCACCTTCAC CGACGAAGAA
ATCGACGAGA TCGATCTGGA TGCCCCCGAC CTGATCCCAA ATTGCGTCGC GGCGATCCTG
CTCGTCTCGC GCCCGGGGGG CGTTCTGGAG GCAGGCAATC TCCCTCACGC CCCAACCCGC
ATCAAACGTC CGGGCCGGAA CGATCCCTGC CCCTGCGGCT CGGGACGCAA ATACAAGCAA
TGCTGCGGCA AGAGTTGA
 
Protein sequence
MGRSDRDLDH LHELLWALPQ ENHPMSLSEL DGYVTGILSC PDLIPPSEWL LHVWGETGDA 
RFPDLATAEA TISAVMAHYN AIASEIARSP WLEPIYEVDP NSDETLWEPW VDGFTRALRL
RPEAWQAVLE QADEETRSAL IFLMALQDIN EGTSTFTDEE IDEIDLDAPD LIPNCVAAIL
LVSRPGGVLE AGNLPHAPTR IKRPGRNDPC PCGSGRKYKQ CCGKS