Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_0106 |
Symbol | |
ID | 4580884 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | - |
Start bp | 97636 |
End bp | 99429 |
Gene Length | 1794 bp |
Protein Length | 597 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639767424 |
Product | recombinase |
Protein accession | YP_913919 |
Protein GI | 119382863 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1961] Site-specific recombinases, DNA invertase Pin homologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0109495 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAGTCG CCATCTACGC CCGCTATTCC TCCGACCAGC AGCGCGAGGC GTCGATCGCC GACCAGTTCC GCATGTGTCG GCTGCGCGCC GAGAAGGAAG GCTGGACGGT GGTCGAGGAA TATTCCGACC ATGCCATCTC CGGCTCGAGC ATGATCCAGC GCCCCGGCAT CCAGGCGCTG ATCCTGGATT CGTCGCGCGG CCGCTTCGAC ATGGTGCTGG CCGAGGCTCT GGACCGGATC AGCCGCGACC AAGAGGATAT CGCCGGCATC TACAAGCGCA TGTGCTATGC AGACATAAAA ATGTTCACCT TGTCCGAGGG CGAGATCACC CAGCTGCATG TCGGACTGAA GGGCACGATG AATGCCCTGT TCCTGAAGGA TCTGGCCGAC AAGACGCGCC GGGGATTGCG CGGCCGGGTC GAGGACGGCA AATCCGGTGG CGGCAATTCC TACGGCTACG ATGTGGTGAA GCGGTTCGAC GGCAATGGCG AGCCGATCCG CGGCGACCGG ACGATCAACG AGGCGCAGGC CGCCGTGATC CGCCGCATCT TCGCCGATTA CGACAGCGGG CTCTCGTCGC GCACCATCGC CATGACGCTG AACCGCGAGG GCGTGCCCGG TCCCATGGGC CGGGAATGGG GGCCGTCGAC CATCCATGGC AACCGCGAGC GCGGCACCGG CATCCTGAAC AACGAGCTTT ATGTCGGCCG GCTGGTCTGG AACCGGCTGC GCTACGTCAA GGATCCCGAC ACCGGTCGCC GGGTCTCACG GCTGAACCCG GAAAGCGAAT GGGTCACCCA GGATGTGCCC GACCTGCGCA TCGTCGACCA GGCGCTCTGG GACGCGGTGA AGGCGCGGCA GGGCGAACTG GCCTTCTCGA CCCGCAGCCG GCCGGAAGGT AATCCGCTGA ACGACCGGCG GCGCCCGAAG CACCTCTTCG CCGGCCTGGT CAAATGCGGC TGCTGCGGGG GCGGCTATTC GATGATCTCG AAGGATCTCC TGGGTTGCTC GACGGCGCGG AACAAGGGCA CCTGCGACAA CCGCGTCAAC ATCCGCCGCG ATGCGCTCGA GGCCTCGGTC CTGAACGGGC TCAAAAAACA CCTGATGGAG CCGGAGCTGT TCCGGGAGTT CTGCACCGAG TTCACCCGGG AGGTGAACCG GCTGCGGATG GAGCGCGGCG CCGATCTGGA GGTCGCACGC CGGGACCTGG ATCGCACGAC GCGGGAACTC GACAAGGCCA TCGACGCCAT CCTGCAGGGC GTCCCGCCGC TGACGCTCAA GGACAAGATC ACACAACTGG AGGCGCGGAA GGCCGAGTTG ACGGAAAAGC TTGCCAATGC CGACGAGCCC CCTCCCCTGT TGCACCCGAA CATGGCGGCG CTCTATGCCC AACGCATCGC CAAGCTTTCC GAGAACCTGC AGCAAGAGGA CAGCCGCGCC CAGGCGGCGG AGATCCTGCG CTCGCTGGTC GAGCAGGTGA CGCTGGTGCC GGAGGATGGC GAACTGGCCA TCGTGCTGCG CGGCGATCTC GGCGCCATCC TGCGCTTTGC CGCGGGCCGC AAGAACCCGG ATTTCCTGTC GGAGGCCGAG GCGCTGGACA ACCTGCTGGC GCAATCGGGC GGCTCGCGGA AGCCGTGGCG CGGACAGCAA AAAACCTCCT CGGCGGTTGC CTTGGAGGTT TCGCAATTAT CGTTGGTTGC GGGGGCCTGC GGCCACTGGC GACATAACAG ATGTTCGCCC CTGTTCCGGC TGGACGGCGG CGATACCGAG AATGCCCATC AACTCGCCGC GTAG
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Protein sequence | MRVAIYARYS SDQQREASIA DQFRMCRLRA EKEGWTVVEE YSDHAISGSS MIQRPGIQAL ILDSSRGRFD MVLAEALDRI SRDQEDIAGI YKRMCYADIK MFTLSEGEIT QLHVGLKGTM NALFLKDLAD KTRRGLRGRV EDGKSGGGNS YGYDVVKRFD GNGEPIRGDR TINEAQAAVI RRIFADYDSG LSSRTIAMTL NREGVPGPMG REWGPSTIHG NRERGTGILN NELYVGRLVW NRLRYVKDPD TGRRVSRLNP ESEWVTQDVP DLRIVDQALW DAVKARQGEL AFSTRSRPEG NPLNDRRRPK HLFAGLVKCG CCGGGYSMIS KDLLGCSTAR NKGTCDNRVN IRRDALEASV LNGLKKHLME PELFREFCTE FTREVNRLRM ERGADLEVAR RDLDRTTREL DKAIDAILQG VPPLTLKDKI TQLEARKAEL TEKLANADEP PPLLHPNMAA LYAQRIAKLS ENLQQEDSRA QAAEILRSLV EQVTLVPEDG ELAIVLRGDL GAILRFAAGR KNPDFLSEAE ALDNLLAQSG GSRKPWRGQQ KTSSAVALEV SQLSLVAGAC GHWRHNRCSP LFRLDGGDTE NAHQLAA
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