Gene Pden_0106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_0106 
Symbol 
ID4580884 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp97636 
End bp99429 
Gene Length1794 bp 
Protein Length597 aa 
Translation table11 
GC content66% 
IMG OID639767424 
Productrecombinase 
Protein accessionYP_913919 
Protein GI119382863 
COG category[L] Replication, recombination and repair 
COG ID[COG1961] Site-specific recombinases, DNA invertase Pin homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0109495 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAGTCG CCATCTACGC CCGCTATTCC TCCGACCAGC AGCGCGAGGC GTCGATCGCC 
GACCAGTTCC GCATGTGTCG GCTGCGCGCC GAGAAGGAAG GCTGGACGGT GGTCGAGGAA
TATTCCGACC ATGCCATCTC CGGCTCGAGC ATGATCCAGC GCCCCGGCAT CCAGGCGCTG
ATCCTGGATT CGTCGCGCGG CCGCTTCGAC ATGGTGCTGG CCGAGGCTCT GGACCGGATC
AGCCGCGACC AAGAGGATAT CGCCGGCATC TACAAGCGCA TGTGCTATGC AGACATAAAA
ATGTTCACCT TGTCCGAGGG CGAGATCACC CAGCTGCATG TCGGACTGAA GGGCACGATG
AATGCCCTGT TCCTGAAGGA TCTGGCCGAC AAGACGCGCC GGGGATTGCG CGGCCGGGTC
GAGGACGGCA AATCCGGTGG CGGCAATTCC TACGGCTACG ATGTGGTGAA GCGGTTCGAC
GGCAATGGCG AGCCGATCCG CGGCGACCGG ACGATCAACG AGGCGCAGGC CGCCGTGATC
CGCCGCATCT TCGCCGATTA CGACAGCGGG CTCTCGTCGC GCACCATCGC CATGACGCTG
AACCGCGAGG GCGTGCCCGG TCCCATGGGC CGGGAATGGG GGCCGTCGAC CATCCATGGC
AACCGCGAGC GCGGCACCGG CATCCTGAAC AACGAGCTTT ATGTCGGCCG GCTGGTCTGG
AACCGGCTGC GCTACGTCAA GGATCCCGAC ACCGGTCGCC GGGTCTCACG GCTGAACCCG
GAAAGCGAAT GGGTCACCCA GGATGTGCCC GACCTGCGCA TCGTCGACCA GGCGCTCTGG
GACGCGGTGA AGGCGCGGCA GGGCGAACTG GCCTTCTCGA CCCGCAGCCG GCCGGAAGGT
AATCCGCTGA ACGACCGGCG GCGCCCGAAG CACCTCTTCG CCGGCCTGGT CAAATGCGGC
TGCTGCGGGG GCGGCTATTC GATGATCTCG AAGGATCTCC TGGGTTGCTC GACGGCGCGG
AACAAGGGCA CCTGCGACAA CCGCGTCAAC ATCCGCCGCG ATGCGCTCGA GGCCTCGGTC
CTGAACGGGC TCAAAAAACA CCTGATGGAG CCGGAGCTGT TCCGGGAGTT CTGCACCGAG
TTCACCCGGG AGGTGAACCG GCTGCGGATG GAGCGCGGCG CCGATCTGGA GGTCGCACGC
CGGGACCTGG ATCGCACGAC GCGGGAACTC GACAAGGCCA TCGACGCCAT CCTGCAGGGC
GTCCCGCCGC TGACGCTCAA GGACAAGATC ACACAACTGG AGGCGCGGAA GGCCGAGTTG
ACGGAAAAGC TTGCCAATGC CGACGAGCCC CCTCCCCTGT TGCACCCGAA CATGGCGGCG
CTCTATGCCC AACGCATCGC CAAGCTTTCC GAGAACCTGC AGCAAGAGGA CAGCCGCGCC
CAGGCGGCGG AGATCCTGCG CTCGCTGGTC GAGCAGGTGA CGCTGGTGCC GGAGGATGGC
GAACTGGCCA TCGTGCTGCG CGGCGATCTC GGCGCCATCC TGCGCTTTGC CGCGGGCCGC
AAGAACCCGG ATTTCCTGTC GGAGGCCGAG GCGCTGGACA ACCTGCTGGC GCAATCGGGC
GGCTCGCGGA AGCCGTGGCG CGGACAGCAA AAAACCTCCT CGGCGGTTGC CTTGGAGGTT
TCGCAATTAT CGTTGGTTGC GGGGGCCTGC GGCCACTGGC GACATAACAG ATGTTCGCCC
CTGTTCCGGC TGGACGGCGG CGATACCGAG AATGCCCATC AACTCGCCGC GTAG
 
Protein sequence
MRVAIYARYS SDQQREASIA DQFRMCRLRA EKEGWTVVEE YSDHAISGSS MIQRPGIQAL 
ILDSSRGRFD MVLAEALDRI SRDQEDIAGI YKRMCYADIK MFTLSEGEIT QLHVGLKGTM
NALFLKDLAD KTRRGLRGRV EDGKSGGGNS YGYDVVKRFD GNGEPIRGDR TINEAQAAVI
RRIFADYDSG LSSRTIAMTL NREGVPGPMG REWGPSTIHG NRERGTGILN NELYVGRLVW
NRLRYVKDPD TGRRVSRLNP ESEWVTQDVP DLRIVDQALW DAVKARQGEL AFSTRSRPEG
NPLNDRRRPK HLFAGLVKCG CCGGGYSMIS KDLLGCSTAR NKGTCDNRVN IRRDALEASV
LNGLKKHLME PELFREFCTE FTREVNRLRM ERGADLEVAR RDLDRTTREL DKAIDAILQG
VPPLTLKDKI TQLEARKAEL TEKLANADEP PPLLHPNMAA LYAQRIAKLS ENLQQEDSRA
QAAEILRSLV EQVTLVPEDG ELAIVLRGDL GAILRFAAGR KNPDFLSEAE ALDNLLAQSG
GSRKPWRGQQ KTSSAVALEV SQLSLVAGAC GHWRHNRCSP LFRLDGGDTE NAHQLAA