| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0100 |
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| Symbol | |
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| ID | 4578622 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 91189 |
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| End bp | 94185 |
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| Gene Length | 2997 bp |
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| Protein Length | 998 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639767418 |
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| Product | conjugal transfer relaxase TraA |
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| Protein accession | YP_913913 |
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| Protein GI | 119382857 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.160086 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATCT ATCATCTTCA CGTCAAGGTC ATTGGCCGCA AGGCCGGGTC AAGCGCGGTG
GCCTCCGCCG CCTACCGCTC GGCCTCGCGG ATGCGCGACG AGCGCATCGA CCGAGTGCAG
GATTTTTCCG CCAAGCGCGG CGTCGTCCAT TCCGAGGTCA TGCTGCCCGA TAATGCGCCC
GAGCATCTTG GCGACCGCGA ACGGCTCTGG AACGATGTCG AGGCGTTCGA GGTTCGTAAG
GACGCCCAGC TTGCCCGCGA GGTGGAATTT GCCATTCCCC GCGAGATGAC GCAGGCGCAG
GGCATCGAGC TTGCCCGCGA TTTCGCCCAA GCCGAATTTG TCGATCAGGG CATGATCGCT
GACCTCAATG TGCATTGGGA CATTGGCGAG GACGGGATGC CGAAACCCCA TGCCCATGTC
ATGCTCACCA TGCGGTCGGT GGACGAGAAC GGTTTTGGCC AGAAGGTCCG CGACTGGAAC
CGCACGGAGA TGGTGGAGCG GTGGCGCGAA CGCTGGGCCG AGCATGTCAA CGAACGTCTG
GCCGAACTCG ACATAGACGC CCGCATCGAC CACCGCAGCC TTGAGGCGCA AGGGATCGGG
CTTGAGCCGC AAAGCCAGAT CGGCGCGCCC GCGCAGCGCA TCGAGGGCGA AGGGATCGAG
GCCGCAGACC GCGCCGACAT GCACCGCGAG ATCGCCCGGA ACAACGGCGC GCGGATCATC
GCCGATCCAT CGGTGGCGCT GGACGCGATC ACGCATCAGC AATCGACCTT CACGCGGCGC
GACATGGCGA AGTTTGCGCA CCGGCACAGC GACGGCATCG ACCAGTTCAA CGAGGTCATG
GGCGCGATGC GCAATGCACC CGATCTGGTC GAACTAGGCA AGGACGGACG CGGTGAGGAT
CGCTTCACCA CCCGCGACAT GATCGAGGCG GAACAGCGGC TGCACCGCGC CGCCGAGATG
ATGGCCGGGA AGGGGCGGCA CGAGGTCAGC GACTGGAACA GGGAGGCGGC ACTTGCCCGC
GCCGAACAGC GCGGCCTTGT CCTGTCCGGC GAGCAGGCCG ATGCGCTGGC GCATGTCACG
GACGGGCGCG ACCTCGGCAT TGTCGTCGGC TATGCCGGGA CGGGAAAGAG TGCCATGCTC
GGCGTGGCAC GCGAGGCTTG GGAAGCGGCG GGCTATGAGG TGCGCGGTGT TGCCTTGTCC
GGCATCGCGG CCGAGAATCT GGAAGGCGGA TCGGGCATTG CGTCGCGCAC CATCGCCAGC
ATGGAACACG GCTGGAAGAA CGGGCGCGAC ATGCTCACGT CCCGCGACGT GCTTGTCATC
GACGAGGCGG GCATGGTCGG CACGCGGCAG CTGGAGCGCG TCCTGTCCCA CGCGCAGGAA
GCAGGCGCAA AGGTCGTGCT GGTTGGCGAT CCGCAGCAGT TGCAATCCAT CGAGGCGGGC
GCGGCCTTCC GTTCGATCCA CGAGCGTCAT GGCGGCGCGG AAATCGGCGA GGTGCGCCGC
CAGCGCGAGG ACTGGCAGCG CGACGCCACC CGCGATCTGG CGACTGGCAG GACCGGCGAT
GCGATCAGCG CCTATGACAG AAACGGCATG GTGCATTCCG CCGACACGCG CGAACAGGCG
CGCGGTGATC TGATCGACAG ATGGGACGGT CAGCGGCAGC ACAACCCCGA CAGCAGCCGC
ATCATCCTCA CCCACACCAA TGCCGAGGTG CGGGAACTCA ACGAGGCAGC CCGGGACCGG
ATGCGGGCGG CTGGCGATCT TGGCGAGGAC GTGCGCCTCA CGGTCGAGCG TGGCGAACGC
AGCTTCGCCG CCGGGGATCG CGTGATGTTC CTGCAAAACG AGCGCGGCCT TGGTGTGAAG
AACGGCACGC TTGGCACCAT CGAGGATGTC AGCCCGCAAT CCATGTCGGT TCGCACCGAT
GACGGGCGTA GCATCTCGTT CGATCTGAAA GACTATGACC GCATCGACCA CGGCTATGCG
GCGACGATCC ACAAGGCACA GGGCATGACG GTGGACCGGA CGCATGTGTT GGCAACGCCC
GGCATGGACG CCCACGGCAG CTATGTCGCC CTGTCGCGTC ATCGCGACGG AATGGACCTG
CATTACGGTC GCGACGACTT TGCCAGTCAG GACAGGCTCA TCAACACCCT GTCGCGGGAT
CGCGCCAAGG ACATGGCGAC CGACTACGAA CAGCAGATCG ACCCGGCACA GGATTATGCC
GAACGGCGCG GCATTACCTT CCGCGCCCGT GTCGCCCAGA TCATGCGCAG GCTGATGCCG
GAGCGTGTGC GCGATGCCAT AGACGATTAT ATCGACAGCC TGCGTGCGCC CGGTGAGCAT
GTGCCAGCAG GACCGGACAG GGAGGCGGCA AGGAGAGAGG TGCAGCGCGA CCTTGAAGTC
ACGTCACGCA AGACCGGCAT TGAGCCGGAA GAACTCTTGC GCCGCGCCAG TTCCGGGCAG
GCTTTCGTGC GCCATGCCCG TGCCGTGGAT GCGATCTTCG CGGCGCAGGA CCTGGGTGTC
GCTGCGACGC CCGGGCAGGT GCAGGAGCTG CACGAGGCCC GCGCGGGTTT CGATCAGCAC
TACCCTCACG GTTCACGCGA CGCCGAGGCC GTCTATAAAC GGAATCCCGG ATTTGCTGCG
GATGTCGCCT CTGGCGATCC AGATCGCGCC GCGCCCGCTA GGCGCGCCCT GCAACTGGAA
ACCGGGATGC GCAGGAACCC CGGCCTGCGC GCGGATCGGT TCGTAGAACG GTTCCGGGAG
GTCAGGCAGG CCAGCGAGTC CAGATATGCG GCGGGGGACT ATTCCGGCTA TCACGCCGCG
CGGGCAGAGA TGGGCAACAT GGCGATGAGC CTCGAACGCG ACCCGCAGAT GGAATCCCTG
CTCGAAACCC GCAAGAAGCA ACTCGGCATC GGCATGGATT TCGACTCAGG GATGAGGCTT
GGCCGGCAAC TCGCCCTCAG TCACGGCCTT GGCAGGGGAA GGAGTATCGG GTTGTAG
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| Protein sequence | MAIYHLHVKV IGRKAGSSAV ASAAYRSASR MRDERIDRVQ DFSAKRGVVH SEVMLPDNAP
EHLGDRERLW NDVEAFEVRK DAQLAREVEF AIPREMTQAQ GIELARDFAQ AEFVDQGMIA
DLNVHWDIGE DGMPKPHAHV MLTMRSVDEN GFGQKVRDWN RTEMVERWRE RWAEHVNERL
AELDIDARID HRSLEAQGIG LEPQSQIGAP AQRIEGEGIE AADRADMHRE IARNNGARII
ADPSVALDAI THQQSTFTRR DMAKFAHRHS DGIDQFNEVM GAMRNAPDLV ELGKDGRGED
RFTTRDMIEA EQRLHRAAEM MAGKGRHEVS DWNREAALAR AEQRGLVLSG EQADALAHVT
DGRDLGIVVG YAGTGKSAML GVAREAWEAA GYEVRGVALS GIAAENLEGG SGIASRTIAS
MEHGWKNGRD MLTSRDVLVI DEAGMVGTRQ LERVLSHAQE AGAKVVLVGD PQQLQSIEAG
AAFRSIHERH GGAEIGEVRR QREDWQRDAT RDLATGRTGD AISAYDRNGM VHSADTREQA
RGDLIDRWDG QRQHNPDSSR IILTHTNAEV RELNEAARDR MRAAGDLGED VRLTVERGER
SFAAGDRVMF LQNERGLGVK NGTLGTIEDV SPQSMSVRTD DGRSISFDLK DYDRIDHGYA
ATIHKAQGMT VDRTHVLATP GMDAHGSYVA LSRHRDGMDL HYGRDDFASQ DRLINTLSRD
RAKDMATDYE QQIDPAQDYA ERRGITFRAR VAQIMRRLMP ERVRDAIDDY IDSLRAPGEH
VPAGPDREAA RREVQRDLEV TSRKTGIEPE ELLRRASSGQ AFVRHARAVD AIFAAQDLGV
AATPGQVQEL HEARAGFDQH YPHGSRDAEA VYKRNPGFAA DVASGDPDRA APARRALQLE
TGMRRNPGLR ADRFVERFRE VRQASESRYA AGDYSGYHAA RAEMGNMAMS LERDPQMESL
LETRKKQLGI GMDFDSGMRL GRQLALSHGL GRGRSIGL
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