Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_0093 |
Symbol | |
ID | 4578615 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | - |
Start bp | 86854 |
End bp | 87855 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 639767411 |
Product | polysaccharide biosynthesis protein CapD |
Protein accession | YP_913906 |
Protein GI | 119382850 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | [TIGR03589] UDP-N-acetylglucosamine 4,6-dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.403582 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCGACA ATAAATCCAT CCTGATTACA GGCGGGACCG GCAGCTTTGG CAAGAAGTAT GTCCAGACGC TGCTGTCGCG GTTCAAGCCC CGAAAGATCA TTGTCTTCTC GCGCGACGAA CTGAAGCAGT TCGAGATGCA GCAGAAGTTC AACGATCCCT GCATCCGCTA CTTCATCGGC GACGTGCGCG ACCGCGAGCG GGTGCTGCAG GCGACGCGCG GGGTGGATTA CATCATCCAT GCCGCTGCAT TGAAACAGGT GCCGGCGGCG GAATACAACC CCGTCGAATG CATCAAGACC AATATCGACG GGGCGCAAAA CGTCATCCAT GGCGCCATCA CCAACAATGT CGAGAAGGTG ATCGCGCTTT CGACCGACAA GGCGGCGAAC CCGATCAACC TCTATGGCGC GACCAAGCTT GCCTCGGACA AGCTCTTCGT CGCCGCGAAC AACATGGTGG GCGAACGCCG GACCCGTTTC GCCGTGGTGC GCTACGGCAA TGTCGTGGGC TCGCGCGGTT CGGTCGTGCC GTTCTTCCAG GGGCTGATCG ACCAGGGCGC GAAAAGCCTG CCGATCACCG ATACCGACAT GACCCGCTTC TGGATCTCGC TCCAGCAAGG GGTGGATTTC GTGCTGAAGA ACTTCACCCG CATGCATGGC GGCGAGATCT TCGTGCCGAA GATCCCCTCG GTGCGCATCG TCGACCTGGC CCGCGCCATG GCGCCGGGGC TTGAACAGCA TGTGATCGGC ATCCGCCCCG GCGAAAAGCT GCACGAAATC ATGTGCCCGG CCGATGACAG CCACCTGGCC GTCGAATACG ATGACCATTT CGTGCTCTCG CCCTCGATCC GCTTCTACGA TCACGACGTG GACTATTTCT CGAACGGCAT CGGCGAGTCC GGCAAGGCCG TGGGGCGTGG CTTCGAATAC AATTCGGGCA CCAACACCCA CTTCCTGAGC GTGGACGAGA TCGTGGAGTT CAACGCGAAG GCCATGGCAT GA
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Protein sequence | MFDNKSILIT GGTGSFGKKY VQTLLSRFKP RKIIVFSRDE LKQFEMQQKF NDPCIRYFIG DVRDRERVLQ ATRGVDYIIH AAALKQVPAA EYNPVECIKT NIDGAQNVIH GAITNNVEKV IALSTDKAAN PINLYGATKL ASDKLFVAAN NMVGERRTRF AVVRYGNVVG SRGSVVPFFQ GLIDQGAKSL PITDTDMTRF WISLQQGVDF VLKNFTRMHG GEIFVPKIPS VRIVDLARAM APGLEQHVIG IRPGEKLHEI MCPADDSHLA VEYDDHFVLS PSIRFYDHDV DYFSNGIGES GKAVGRGFEY NSGTNTHFLS VDEIVEFNAK AMA
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