Gene Pden_0089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_0089 
Symbol 
ID4578611 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp81485 
End bp82816 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content56% 
IMG OID639767407 
Producthypothetical protein 
Protein accessionYP_913902 
Protein GI119382846 
COG category[R] General function prediction only 
COG ID[COG4310] Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.685603 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTGATC TTTCTCATGT TTTCGACCGG CTTTTTCCAA TCTGCCGCAG CATTACGGGG 
CCGGGGCTAC GGGAAAGCCT TGAGATTCTC GGTGAATACA TGCCGCTTAA ACAGCATGCT
GTAGCGAGCG GAGAACAGGT TTTGGACTGG ACGGTGCCGA ACGAATGGTC CGTCGAGGGC
GCGCAACTCA TCGGACCGAA TGGCGAGATG ATCTGTGATT TCGCGATCAA CAATCTGCAT
CTAGTGAACT ATTCGATCCC CATGCAGGCC AGCCTTTCAC TGGAGGAACT GCAGCCATAT
TTGCATTCGT TGCCGCATCT GCCCGACGCT ATTCCCTATG TGACGAGCTA TTATAACCCC
CGCTGGGGTT TCTGCCTACC ACATCGACAG CGGACGGCAT TACCCGATGG GACATATCGG
GTAGATATCC GCACTACACA TGCCCCCGGC GCCGTCAATT TCGCCACTAC CCGGCTTGAA
GGGGACAGTG ACGAAACCGT ATTGATCTCC TCCTATCTCT GCCATCCGAG TATGGCAAAC
AACGAATTAT CTGGCCCGCT CGGACTTTTG CGGCTTTATG AGCATATCAA AGCAATGCCG
CACCGGAATT ATACATATGA ATTCCTCCTC TGCCCTGAAA CCATTGGCTC GATTGCCTAT
CTGAGCCAGT TTGGCGCCGA GATCGGCCCC CGACTGGCCG GCGGGATGGT ACTGACCTGC
TTGGGTGGGC ATCGCCCCAC GCTCAATTTC AAGCTATCCC GGCGCGACTG GCTAGGCCGG
CCCGGCACGA TGGACCGCTT GGCTCGCCAC TTCGCCGTCA CCTACCCCGA TCAATTCGAG
TTGCGGCCGT TCACCCCTGT TTCCGGCTCC GACGAGCGGC AGTTTTGCTC GCCCGGTTAC
GACTTCCCGG TCATCCAAGC TGCGCGAACA GTTTACGGGC AATTCGTAGA ATATCATACC
TCAATGGACG ACAAACGCTT CATGCGTATC GAACAAGTGG AGCGGGCCGC AGACAGGCTT
GCAGAGTTCA TTGAGGTCTT CGATACTGAA GGGGCCCCTC TCAAGAATAC CCAACCCTAT
GGCGAGCCAC AGCTTGGACG CCGGGGTCTC TATCCCACGA TCAATTCCCC AATGAATCGT
GGCAATTCGA CAGACAATGC GACGGATCAG CGCCAGACTC TGAATCGGCT TCTGATGATA
TTGTCACTAT CGGATGGCTC ACGCGGATTA TTGGAAACCG CGGAACGGAT CGGGTGTGGC
CCGGACCAGT TGCTGCCGAT CATCCGCGAG TTACGCCGCC AAGATATTCT GGTCGCCGAA
AGGAGAGTTT GA
 
Protein sequence
MIDLSHVFDR LFPICRSITG PGLRESLEIL GEYMPLKQHA VASGEQVLDW TVPNEWSVEG 
AQLIGPNGEM ICDFAINNLH LVNYSIPMQA SLSLEELQPY LHSLPHLPDA IPYVTSYYNP
RWGFCLPHRQ RTALPDGTYR VDIRTTHAPG AVNFATTRLE GDSDETVLIS SYLCHPSMAN
NELSGPLGLL RLYEHIKAMP HRNYTYEFLL CPETIGSIAY LSQFGAEIGP RLAGGMVLTC
LGGHRPTLNF KLSRRDWLGR PGTMDRLARH FAVTYPDQFE LRPFTPVSGS DERQFCSPGY
DFPVIQAART VYGQFVEYHT SMDDKRFMRI EQVERAADRL AEFIEVFDTE GAPLKNTQPY
GEPQLGRRGL YPTINSPMNR GNSTDNATDQ RQTLNRLLMI LSLSDGSRGL LETAERIGCG
PDQLLPIIRE LRRQDILVAE RRV