| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0089 |
|---|
| Symbol | |
|---|
| ID | 4578611 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 81485 |
|---|
| End bp | 82816 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639767407 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_913902 |
|---|
| Protein GI | 119382846 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4310] Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.685603 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGATC TTTCTCATGT TTTCGACCGG CTTTTTCCAA TCTGCCGCAG CATTACGGGG
CCGGGGCTAC GGGAAAGCCT TGAGATTCTC GGTGAATACA TGCCGCTTAA ACAGCATGCT
GTAGCGAGCG GAGAACAGGT TTTGGACTGG ACGGTGCCGA ACGAATGGTC CGTCGAGGGC
GCGCAACTCA TCGGACCGAA TGGCGAGATG ATCTGTGATT TCGCGATCAA CAATCTGCAT
CTAGTGAACT ATTCGATCCC CATGCAGGCC AGCCTTTCAC TGGAGGAACT GCAGCCATAT
TTGCATTCGT TGCCGCATCT GCCCGACGCT ATTCCCTATG TGACGAGCTA TTATAACCCC
CGCTGGGGTT TCTGCCTACC ACATCGACAG CGGACGGCAT TACCCGATGG GACATATCGG
GTAGATATCC GCACTACACA TGCCCCCGGC GCCGTCAATT TCGCCACTAC CCGGCTTGAA
GGGGACAGTG ACGAAACCGT ATTGATCTCC TCCTATCTCT GCCATCCGAG TATGGCAAAC
AACGAATTAT CTGGCCCGCT CGGACTTTTG CGGCTTTATG AGCATATCAA AGCAATGCCG
CACCGGAATT ATACATATGA ATTCCTCCTC TGCCCTGAAA CCATTGGCTC GATTGCCTAT
CTGAGCCAGT TTGGCGCCGA GATCGGCCCC CGACTGGCCG GCGGGATGGT ACTGACCTGC
TTGGGTGGGC ATCGCCCCAC GCTCAATTTC AAGCTATCCC GGCGCGACTG GCTAGGCCGG
CCCGGCACGA TGGACCGCTT GGCTCGCCAC TTCGCCGTCA CCTACCCCGA TCAATTCGAG
TTGCGGCCGT TCACCCCTGT TTCCGGCTCC GACGAGCGGC AGTTTTGCTC GCCCGGTTAC
GACTTCCCGG TCATCCAAGC TGCGCGAACA GTTTACGGGC AATTCGTAGA ATATCATACC
TCAATGGACG ACAAACGCTT CATGCGTATC GAACAAGTGG AGCGGGCCGC AGACAGGCTT
GCAGAGTTCA TTGAGGTCTT CGATACTGAA GGGGCCCCTC TCAAGAATAC CCAACCCTAT
GGCGAGCCAC AGCTTGGACG CCGGGGTCTC TATCCCACGA TCAATTCCCC AATGAATCGT
GGCAATTCGA CAGACAATGC GACGGATCAG CGCCAGACTC TGAATCGGCT TCTGATGATA
TTGTCACTAT CGGATGGCTC ACGCGGATTA TTGGAAACCG CGGAACGGAT CGGGTGTGGC
CCGGACCAGT TGCTGCCGAT CATCCGCGAG TTACGCCGCC AAGATATTCT GGTCGCCGAA
AGGAGAGTTT GA
|
|---|
| Protein sequence | MIDLSHVFDR LFPICRSITG PGLRESLEIL GEYMPLKQHA VASGEQVLDW TVPNEWSVEG
AQLIGPNGEM ICDFAINNLH LVNYSIPMQA SLSLEELQPY LHSLPHLPDA IPYVTSYYNP
RWGFCLPHRQ RTALPDGTYR VDIRTTHAPG AVNFATTRLE GDSDETVLIS SYLCHPSMAN
NELSGPLGLL RLYEHIKAMP HRNYTYEFLL CPETIGSIAY LSQFGAEIGP RLAGGMVLTC
LGGHRPTLNF KLSRRDWLGR PGTMDRLARH FAVTYPDQFE LRPFTPVSGS DERQFCSPGY
DFPVIQAART VYGQFVEYHT SMDDKRFMRI EQVERAADRL AEFIEVFDTE GAPLKNTQPY
GEPQLGRRGL YPTINSPMNR GNSTDNATDQ RQTLNRLLMI LSLSDGSRGL LETAERIGCG
PDQLLPIIRE LRRQDILVAE RRV
|
|---|
| |