Gene Pden_0081 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_0081 
Symbol 
ID4580958 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp75555 
End bp77324 
Gene Length1770 bp 
Protein Length589 aa 
Translation table11 
GC content61% 
IMG OID639767399 
Productregulatory protein, LuxR 
Protein accessionYP_913894 
Protein GI119382838 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.318865 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTCGAAT CCAAACCAAA GACACCATTG GCCGATCAGC ATTTCTTTCT GTCGCCTCAG 
TTGAGCGAAG GCCAGAGTTC GGACGACGAT ATCGATCTGA ACATCATCGC CAGCACCTAT
CGCTCGATCA TCGATGAGCA TGCTTTCGAT GAGATGGTGG CGAGTTGGGA AACCAAGCTC
GCATCGTCCG GCGGAGATGC TGAGCATCCC AAAGTCTCCA AGGGGCTGTT CAGCCAGTTG
CTGACCTTCC GCAACACCCT AGAAAAGCTG GATGTCCCGA CGGAAAGCGA TCCGCTGAAA
CTGGCGGTTT CCGAAGTGCC CGGGCCAGCG ACTGTGCTGT CGCCAAACGG CAATGTCGCG
GTCATCAACA TTGCGGGCGA GCGCGCGTTC GGCACGCGCC AGGGCGCGTT CATGGACGTT
GCAGTCATCG CGCCGAATTC CCTGGAGGAC TATTGCGCTC TGTTGCGTGC CGCCACCGGA
CAAGGCAACG CGGCGCAAGC GATCCTGACG ATCCTGCCGG CCACCGAGGG CTATGGCGAA
TCCTTCTTGG CCGAGGGCTA CCTGATCCGC GTGCCGGGCC AGAGCGGCGC CCATATCGCC
ATCCGCTCCC TGGAAATCGC CTGGGGGCCG CGGATCGCCG AGCAGTTGCA ACAGGCCTTC
GGCCTGACGC AGGCCGAATC CGAGGTCGCG CATCTGTTCT TTCGTCTGCG CAACCTCGAA
TCGATCGCGG CAGAGCGAGG CGTGTCGCTG CTGACGGTGC GGACTCAGAT CAAGACGATC
ATGGCCAAGA TGGGTGCCCC CTCGAATATC GACCTGATGC GCCTGCTGGC CATGATCGCC
AGTCGTGAAC ATGTCGGGCT TCGGGGCGAA GCCCCTGTCT GGCACGATCC CCTGGGCCGC
GAAAAGCTGA TCGAGATGCC CGATGGCCGC AAGATCGCAT GGACGTGGAT AGGCGCGAAG
CGGGGCGCTC CGGTAGTCAT GCTTCGCGGA TTGCCGATGA CCTATCTGCT GCCTGGCGGT
GGAGAAGCCC GGCTGCGCGA CGCGGGCATC TGCCTCTACG TTCCGTCGCG ACCCGGTCAC
GGGAACAGCA CCATGGACTC CTCGCTTGAT GTGATGAGCG ACAATCTTGT TGCATTGCGG
GTCTTTCTCG ACCAGGTCAT CGGCCGCCCT TGCCTTGGCG TCGGATTGGC CAGCGGCACC
TTGCCTCTCG TCGTCGAAGC GGTGGCAAAT CCAGCGCGTT TCCACGGGAT ACTGGCAGTC
GGTTTCTCGT GCGGGATCGA CCCTTCGGGA GTCCAGCGCC TGCCGCAGAT TCAACGCATC
ATGCTGCAAC TCGCAGACAG CGCGCCATGG GTTGCCGAAC TGATGGCCAA ATCGGGGCAT
CGGATGATGC GCCAGCACGG CCTGGACTGG TATCTGGAAC GCGCCTTCCG CCATACGCCG
CTGAACCAGC AAACGGTGCG CAACCCCGAT TGGACGGCAT TGATCCGGAA CGCCTGTGAA
CATCTGCTGA AGCAGGGCCA TGCGACCTTT GTGCGGGAAT TGCAGCTTTC GCGCCACCGC
ATGGACACCG CGCTGCGCGA GTTGCGCATA CCCATGCGAT ATCTGGCGCC CACCGAAGAT
CCCGGCATCG ATCTTGCTTC GTGCAGGCAA CTGGAAAGGA TCAATCCCCT GATCACCGTC
GAGCCGGTCA CCGATGCGGC CGAGTTGGTT TTTTACCAAC GCAATGATCT CATCCTTGAT
CGTATCATCG CCTTGGTACA CCGAAACTGA
 
Protein sequence
MLESKPKTPL ADQHFFLSPQ LSEGQSSDDD IDLNIIASTY RSIIDEHAFD EMVASWETKL 
ASSGGDAEHP KVSKGLFSQL LTFRNTLEKL DVPTESDPLK LAVSEVPGPA TVLSPNGNVA
VINIAGERAF GTRQGAFMDV AVIAPNSLED YCALLRAATG QGNAAQAILT ILPATEGYGE
SFLAEGYLIR VPGQSGAHIA IRSLEIAWGP RIAEQLQQAF GLTQAESEVA HLFFRLRNLE
SIAAERGVSL LTVRTQIKTI MAKMGAPSNI DLMRLLAMIA SREHVGLRGE APVWHDPLGR
EKLIEMPDGR KIAWTWIGAK RGAPVVMLRG LPMTYLLPGG GEARLRDAGI CLYVPSRPGH
GNSTMDSSLD VMSDNLVALR VFLDQVIGRP CLGVGLASGT LPLVVEAVAN PARFHGILAV
GFSCGIDPSG VQRLPQIQRI MLQLADSAPW VAELMAKSGH RMMRQHGLDW YLERAFRHTP
LNQQTVRNPD WTALIRNACE HLLKQGHATF VRELQLSRHR MDTALRELRI PMRYLAPTED
PGIDLASCRQ LERINPLITV EPVTDAAELV FYQRNDLILD RIIALVHRN