Gene Cpha266_2396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpha266_2396 
Symbol 
ID4568618 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium phaeobacteroides DSM 266 
KingdomBacteria 
Replicon accessionNC_008639 
Strand- 
Start bp2783943 
End bp2784926 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content42% 
IMG OID639766954 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_912808 
Protein GI119358164 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.070652 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATATACC AAATGCAGAT GCCTGCTAAA ATAGAGGTTG ACGAAGCTAC GCATACGGAG 
ATGTTTGGAA GGTTTATTGC CCAGCCTCTT GAAAGAGGGT ATGGGGTGAC GATTGGTAAT 
GTAATGCGCA GAGTATTGCT TGCCTCGCTC CCGGGAACAG CGATAACGGG CGTGAAAATC 
GAGGGAGTGT ATCATGAGTT TTCTGCAATT GAGGGCGTGA GAGAGGATGT TCCCGAAATT 
GTTCTGAATC TCAAAAGAGT AAGGTTTAAA TCAAACTGTA AAAGAAGTTG CAAGACATCG 
CTCTCTATTG CAGGTACGAA AGACTTTACT GCTGGTGACA TTATTGCCAA GGAAGGCGAG 
TTTGAGGTTT TGAATAAAGA TCTCCATATC GCAACGGTCA ATGACGGTTC TGTTCTTAAT 
ATAGAGATAT ATATCGGCAG AGGCAGAGGT TATCTTCCTG CTGAAGAGAA TCATCCGGAA 
GGAATGCCGA TAGGGTTTAT AGCTATCGAC GCTATTTTTA CTCCGATAAG AAATGTAAAG 
TTTACGGTTG AAAATACCCG GGTAGGTCAA AGAACCGATT ACGAGAAGAT GATTCTCGAT 
GTTGAAACTG ATGGATCGAT AGCCCCTGAT GATTCGATCA GTCTTGCAGG CAAGATCATC 
AATGATCATA TCATGTATTT TGCAAACTTT TCGCCTACTG AGGAAGAGTT TACTGAGGAG 
GAGTTCAAGC AGCAGGACGA CGAGTTCGAG AGTATGCGCA AACTTCTTCA TACGAAAATA 
GAGGATCTCG ATCTTTCCGT AAGATCGCAT AACTGCTTGA GATTGGCGGA GATCGATACG 
ATTGGCGATC TTGTTTCAAG AAAAGAGGAT GAGCTGCTTA ACTATAAGAA TTTCGGAAAA 
AAGTCTTTGA CAGAGCTCAA AGAGCAGCTT GAAAAGTTTG ATCTGAAATT TGGGATGGAT 
ATCACCAGAT ATCAGATGAA GTGA
 
Protein sequence
MIYQMQMPAK IEVDEATHTE MFGRFIAQPL ERGYGVTIGN VMRRVLLASL PGTAITGVKI 
EGVYHEFSAI EGVREDVPEI VLNLKRVRFK SNCKRSCKTS LSIAGTKDFT AGDIIAKEGE 
FEVLNKDLHI ATVNDGSVLN IEIYIGRGRG YLPAEENHPE GMPIGFIAID AIFTPIRNVK 
FTVENTRVGQ RTDYEKMILD VETDGSIAPD DSISLAGKII NDHIMYFANF SPTEEEFTEE 
EFKQQDDEFE SMRKLLHTKI EDLDLSVRSH NCLRLAEIDT IGDLVSRKED ELLNYKNFGK 
KSLTELKEQL EKFDLKFGMD ITRYQMK