| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpha266_1962 |
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| Symbol | |
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| ID | 4570137 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium phaeobacteroides DSM 266 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008639 |
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| Strand | - |
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| Start bp | 2275676 |
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| End bp | 2278051 |
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| Gene Length | 2376 bp |
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| Protein Length | 791 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639766543 |
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| Product | ribonuclease R |
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| Protein accession | YP_912399 |
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| Protein GI | 119357755 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.197804 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCAAGAC AACGAGATAG CCGAAAACCG GGATCGTCCG GAAGGAGAAG AGGTAAGCCG
GAGGGAAGGC CGACAGGCGA AAGGGTTCGC CCTAACGATC ATATTCTGAT TAACGAGTTT
CTTTTCAGAC GAGGAGAGAG CTCTCTCGGT GCTGAAATCA TAACCTTTTT ATCTGACCGA
GAAGGTGAAC GGTTTCGTTC GGTTGATCTT GCTAAACTTC TTGGCTACAC TGAATCCAGA
CATCTTCCCG GTTTCTGGTA TGTGCTGCAC AAACTGCAGG AAGAGGGTGC TGTTGACAAG
GATTCCAACC GATGCTACGG TATGGCAGGC CTCGAAGATG CAACCTATGA AGATCATCTT
GTTCATCTGA AGCAGTTTCC TCTGCCCGGT AAAGAGCAGT TTGTTGTTGA TAAGATCTAC
ACCGGACGTC TTTCCACTCA TCCAAACGGT TACGGATTTC TTGATGTCGA AGGGTTTGAT
GATGACATTT TCATCAAGGC TGCCGACATG AACTCCTCGA TGCATGGCGA TGAGGTTGAG
GTACAGGTCA CCAAAGTGCC GGAAACCTAT GCGTCGAAAT CAACTCCGCA CCAGCGTTGC
GAGGGCATTG TCAAGAGCGT GGTGAAACGA CGGGTCACAA CGATTGTCGG CACGCTTACG
CGCGAAAACC GCAGATTTCT TCTCAAGCCT GATGAACGGA AAATTCTGCC GGTGATCGTT
GTGGCGCTGA AAAACGCGGC AAAGGCAAAA GACGGACAGA AAGTTCTTGT CGGCGAGCTC
GATTTCAGCA AGGAGGGCGT TATCAACGCG AAGGTGCTTG AAGTGCTTGG TTCTGCCGGA
GACTCGCAGG TCGAGGTGAG CGCCATTGCC CGCAATCACG GTATCGATGA GACTTTTGAG
GCTCCGATTG TCGAGTTTGC CCAGTCCATC AGGGACGGAA TTACCGACGA GGATCTCGTT
GGACGTCTCG ATATTCGCGA CAAGCTTGTT TTCACCATCG ATCCTGTTGA TGCAAAAGAC
TTTGACGATG CGCTCTCCCT TGAGACGCTT ACAGGAAACC GCTATCGGAT AGGTGTGCAT
ATTGCCGACG TGTCGCACTA TGTTCCTGAA GATTCGCTGC TTGACAAGGA GGCGATGAAA
CGGGCGACCT CGGTCTATCT TGTCGATCGG GTTATCCCCA TGCTTCCCTC AAGGCTTTCC
GAACAGATAT GCAGTCTTAA CCCCGGCGTA GATCGGATGG CATTTTCCGT CTTTATTACC
ATGACCGATG CCGGAGAGGT CGAGAAGCAG GAGTTTCAGA AAACGGCGAT ACATTCGAAG
CGCAGGTTTA CCTATGAAGA TGTTCAGCAG ATTCTGGACT CCGGAGAGGG TGATTTTGTC
GCGGAACTCA AACTGCTCGA TACGCTCAGC ACAACCCTTC GTGAAAAGCG GTTCAAGCAT
GGCGGCCTTG ATTTTGAGAC CGAGGAGGTC CGTTTCAGGC TTGGCAGCAA AGGCGAACCG
CTTGAGGTGA TGAAAAAGGA GCGTCTCGGA AGCCACCGTC TCATCGAAGA GTTCATGCTG
CTTGCAAACC GCAAGGTTGC CGAGTATCTG ACCAAAACGT TTGGCGAAGG GAAAAAAACG
CCGCAACCAT GTATTTACCG GGTTCACGAT GCTCCCCAGT TGGAAAAAGT GGTTATTCTT
TCCAACTTTG TCAAGAGGCT TGGCTATGAT CTCAAGCTCA ACAGAGGCAA GGATGGTCCT
ATTGTTACGG CAAAAGCCCT GCGACAGCTT CTGCAGCAGG TACGGGGCAC CAACCTTGAG
TTTCTCGTCA ATGAACTGGT GCTGCGATCC ATGTCAAAGG CGGTCTATAC CGGCGACAAT
GCCGGGCATT ACGGGCTTGG CTTTGAACAC TATACCCACT TTACCTCACC GATCAGGCGT
TATCCTGATC TGATTATTCA CCGCCTGCTC TTCGAGTATG AGAGTTTGCG TAAAAGCCGC
AAAAAAATCA CCGAAAAAAG AGTTGCCGCA TTGAAGGCAA AACTTCAGTC TGTCTGTCAG
ATCTCCAACG AGCGTGAAAA AGGAGCTGTC GAGGCCGAGA GGGAGTCGAT CAAACTCAAG
CAGGTCGAGT ATATGGCAAG CCATATCGGC AAGGAGTATT CCGGCATAAT TTCGGGAGCT
ACAGAATACG GTATTTACGT CCGCATGGTG GATTTTGCCA TCGAAGGTCT CGTGCACATG
CGCAATCTGA CCGACGACTA CTATGAATAT GACGAAGCCA GCTACTCGCT GCTGGGCAAG
CGGCGGAAAC GGCGGCTTCA GATAGGCAAC CGGGTGAAGA TCAAGGTGCT GTCGGTGGAT
GTGCAGCGAA GAACCATCGA TCTGGTGATC GCATAG
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| Protein sequence | MARQRDSRKP GSSGRRRGKP EGRPTGERVR PNDHILINEF LFRRGESSLG AEIITFLSDR
EGERFRSVDL AKLLGYTESR HLPGFWYVLH KLQEEGAVDK DSNRCYGMAG LEDATYEDHL
VHLKQFPLPG KEQFVVDKIY TGRLSTHPNG YGFLDVEGFD DDIFIKAADM NSSMHGDEVE
VQVTKVPETY ASKSTPHQRC EGIVKSVVKR RVTTIVGTLT RENRRFLLKP DERKILPVIV
VALKNAAKAK DGQKVLVGEL DFSKEGVINA KVLEVLGSAG DSQVEVSAIA RNHGIDETFE
APIVEFAQSI RDGITDEDLV GRLDIRDKLV FTIDPVDAKD FDDALSLETL TGNRYRIGVH
IADVSHYVPE DSLLDKEAMK RATSVYLVDR VIPMLPSRLS EQICSLNPGV DRMAFSVFIT
MTDAGEVEKQ EFQKTAIHSK RRFTYEDVQQ ILDSGEGDFV AELKLLDTLS TTLREKRFKH
GGLDFETEEV RFRLGSKGEP LEVMKKERLG SHRLIEEFML LANRKVAEYL TKTFGEGKKT
PQPCIYRVHD APQLEKVVIL SNFVKRLGYD LKLNRGKDGP IVTAKALRQL LQQVRGTNLE
FLVNELVLRS MSKAVYTGDN AGHYGLGFEH YTHFTSPIRR YPDLIIHRLL FEYESLRKSR
KKITEKRVAA LKAKLQSVCQ ISNEREKGAV EAERESIKLK QVEYMASHIG KEYSGIISGA
TEYGIYVRMV DFAIEGLVHM RNLTDDYYEY DEASYSLLGK RRKRRLQIGN RVKIKVLSVD
VQRRTIDLVI A
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