| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpha266_1918 |
|---|
| Symbol | |
|---|
| ID | 4569862 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides DSM 266 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008639 |
|---|
| Strand | + |
|---|
| Start bp | 2225309 |
|---|
| End bp | 2226466 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639766500 |
|---|
| Product | homocitrate synthase |
|---|
| Protein accession | YP_912358 |
|---|
| Protein GI | 119357714 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR02660] homocitrate synthase NifV |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATACTTG AAAAGAATAC GCCTTCGGGC AATGGCATAA GGCCCTGGAT TATCGACACA
ACCCTGAGAG ATGGCGAACA GGCTCCGGGA GTTGTATTTA CTGCTGGCGA AAAATACAGA
ATCGCTCAAC TGCTTGCAGA AATTGGCGTC AACGAGCTTG AAATCGGGTA TCCGGCAATC
AGCAGCGAGG AACGAGAGAA CATCAGAACC ATTGCCGCGC TTCATCTGCC GGTGCGCCTG
ACCAGTTGGG CAAGAGCGTC ATGGGACGAT ATCGAACATG CCAGGAGCTG CGAAACCGAG
GCGGTGCACA TCAGTTTTCC GGTCTCGCCA CTCTACCTGC AACTGATGCA GAAGGATTAC
CTGTGGGTGC AGCGCCAGCT CCAGGAACTG GTGCCGAAAG CAAAAAAATA TTTCAACATT
GTCAGTGTCG GGGCTCAGGA TGCAACAAGA ACGCCGTATG AACTTCTGAA AACCTTTGTT
CTCGATGCTG AAGCGTGCGG AGCCGACAGG ATTCGCATAG CCGATACCGT TGGCATAGCG
ACTCCCATAT CGGTACTCGA TCTGGTGGGA CGTCTTCAGT CCGTAAGCCC GACAGCCCTC
GAATTTCATG CGCACAACGA TCTCGGCATG GCAACGGCCA ATGCGTTCAC CGCTCTTGAG
GCCGGCTGCT CCGCTGTGAG CGTTTCGGTA ACGGGACTTG GCGAACGGGC GGGTAACGCC
GCTCTTGAAG AACTTGCCGT CGCTCTTTTG CTCAACAATC AATTCCAATG CAAGATCGAC
ACCACAAAGC TTGCTATGCT CTGTAAAACC GTCAGCAAAG CATCCGGAAG ACCAATCCAG
GATCAGAAAC CGGTTATCGG CAAATCGGTA TTCCAGCACG AATCAGGCAT TCATTGCGCA
GCATTGTTAA AAAATCCGCT CTCCTACCAA CCATTTCTTC CATCTGAAGT CGGAAGAAAA
CCTCATGAGC TGGTAATCGG CAAGCATTCC GGCAGTGCGG CGCTCAAACA TTTTTACCAT
ACAAGAGGAA TCAGCCTGAC AAGAGATGAA GCCAGCCGGA TCCTGAGTCT GGTCCGCAGA
AGCGCTGATG AAAAGAAAAG AGCACTGACA GCCCATGAAC TTGATGAGAT CTACGCAATA
CGCAGCCAAA AAGGATAA
|
|---|
| Protein sequence | MILEKNTPSG NGIRPWIIDT TLRDGEQAPG VVFTAGEKYR IAQLLAEIGV NELEIGYPAI
SSEERENIRT IAALHLPVRL TSWARASWDD IEHARSCETE AVHISFPVSP LYLQLMQKDY
LWVQRQLQEL VPKAKKYFNI VSVGAQDATR TPYELLKTFV LDAEACGADR IRIADTVGIA
TPISVLDLVG RLQSVSPTAL EFHAHNDLGM ATANAFTALE AGCSAVSVSV TGLGERAGNA
ALEELAVALL LNNQFQCKID TTKLAMLCKT VSKASGRPIQ DQKPVIGKSV FQHESGIHCA
ALLKNPLSYQ PFLPSEVGRK PHELVIGKHS GSAALKHFYH TRGISLTRDE ASRILSLVRR
SADEKKRALT AHELDEIYAI RSQKG
|
|---|
| |