| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpha266_1843 |
|---|
| Symbol | |
|---|
| ID | 4571185 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides DSM 266 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008639 |
|---|
| Strand | - |
|---|
| Start bp | 2120381 |
|---|
| End bp | 2123419 |
|---|
| Gene Length | 3039 bp |
|---|
| Protein Length | 1012 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639766425 |
|---|
| Product | cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters |
|---|
| Protein accession | YP_912283 |
|---|
| Protein GI | 119357639 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00224426 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACGACAC TTGACAATAC GACGCCTGAT ATTCGCAAGC TGCTTGCGGC AATCCCTCTC
TTTACTGATT TGACGGAGGA GAAGATGAGT ATGCTTCTCA ACGTATGCTC TGTTGCTTTT
TATTCGATAG GCAAGCCGGT TATCAGTAAG GGCGCTTTGC CCGATGCCCT TTATATCGTC
AGTTCTGGCC GGGTACGCTC TCTTTTTCAG AGTGGAACCG GAGGGGTGCA GACGCTCAGG
CTGCTTGGTG CTGGCGATAT GTTCGGCTGG GTTAGTCTGG TTCGCAATGA ACCAACGGAA
ATTGTTACCG CCTCTGAAGA GACGGTGTGC ATCAGAATTC CTGTGTCGTC TGTGACCATG
GTTGTTAATG CCCTGCCTCA TCTTTATGAC AGGCTTTCGG TTACAACGGA TCCCGCTGAA
ATTGGGCTGC TTCTTGAACA TATTTATAGT AAGGATCCAA AAAAAGAGAG TTTGTTACAG
GGATCGGGTT TTTCCTGCAT CAAAGATCTT GCCTTGCATC TTTATCAGTC GGCAGTGGTT
GTCGATAGCG GTTTTTCGAG GACGGTGCCT CAAAAACAAT TGCGATGGTT TGTCAGCAGA
AGCGGTGATT CGGCTTATTC TCCGGGAAGT GAATATCATC CTCCGGTTAA CGGTATTCCT
GCTTCGCTCT CTTTGCGTCT TGTCGGACTT GATCTCTCCT GCATACAGGA ATCGCTTGCA
GCGGAGATTC CGGCGATGCC GTTCTCTCTT CCTGAGGCGG ACTCTCCTGA TTTGACTGAT
GAAGCATCAG CCGGAGATGA TCAGCTTTCA TCAAAAAGGG ATCGCTTCAG TTTTCACAAA
GGTGAAGCGG AGAGAAAGGG CGGACTGAAA GGGTTGCCTT TTTTTAAGGG TCGGGGAGTG
GTTGAGGAGA CGTTTGCCTG TTTTCAGATG CTTGGCAAGC AGCTCAATGT TCCGATTAAA
AAAGATCTCA TACAGAGTAT TATCGGTAAT CAGTACGCCC GGAACGGTCA GCTTTCGCTG
CAGGATTGCG GAGGTGTAGG GGTTGTGCTC GGTCTGAAAG CCCAGGTGGT GAGTTTTCAG
CAGGATGCGT TGCCGAGACT GAAGGTTCCC GCTCTTGTCC GTTGGGAAAA AAGTTTTGCC
GTGCTGTACA AGGCTTCGGC ATCGGAAGTT GTTCTTGCAA TACCCGCTTC TTCCGGTATC
AAGGTGCTTG CGGCCCGCGA ATTCTGGGAG AGCTGGGAGC ATAAAGGAGA GGCTCTGGTG
CTGGATGCGA GGGCAGATAC TCCCGAACAG AAATTCGGGT TTGACTGGTT TGCTCCTTCG
CTTAAAAAGT ATCGCAATGT TCTGGGCGAG GTGATGATCG CCTCCTTTTT TACCCAGATC
ATGACCCTGG TCAATCCGCT CCTGTTCATG ATTATTATCG ATCAGGTTAT TGTAAGGAAC
AGTTATGCAA CCCTGCATGT TCTTGGTATG TTTATGCTGA TTATCGCGCT TCTCCAGGCA
GTGCTGAACA GTCTGAGAAC CTATCTTTTT GTTGATACGA CCAATCGGAT TGACGTTGCT
CTCGGGGCTG AGGTGATTGA TCATCTGTTG CGTTTGCCGC TTCGTTTTTT TGAAAAAAGG
CCTGTTGGAG AGCTGAGTTC ACGTATTGGC GAGCTTGAAA GGATCCGCCA GTTTTTAACG
GGTACTGCGC TTGGAGTGGT GCTTGATGCG GTGTTTTCGG TCGTCTATGT TATTGTTTTG
TTCGCGTTCA GCTGGAAGCT TGCGCTCATG GCGCTCTCCG TTGTTCCTTT GATTGGTCTT
GTTACCTTTC TGTTGTCGCC GGTTATCAGA AAGCAGTTGC GGGAAAAAGC CATAAAACAT
GGACAGACCA ACGCCTATCT GATAGAGGTG CTTTCGGGTA TACAGACCGT GAAATCCCAG
AACATTGAAT TGCGCGCCCG ATGGAACTGG CAGGAGAAGT ACGCGGCTTA TGTGAAGGAG
GGGTTCAAGC CGGTTGTTAC CGGTACCCTT GCCAATTCTG CCAACTCCTT TCTTACCCAG
GCCTCGGGGC TTATTGTGAT CTGGGCAGGA GCCTGGCTTG TTTTAAATCA GGAGATGACT
CTCGGGCAGC TTATCGCTTT CCGGATTATT GCCGGTTATA TTACCAGTCC TGTTATGAGG
CTTGCACAGC TCTGGCAGAA CTTTCAGGAG ACAGGCATGT CGCTTGAACG ACTTGCCGAT
ATTGTGGATA CGCCGCAGGA AGGCGGGCGT GATCAGTTGG CGCAGATTCC CCTGCCGCTC
ATCAAGGGCG AAATTCTCGC TGAAAATGTC TCTTTCCGTT TCAGGGATAA TACTCCTATG
GTGCTGAAGA ATGTGAGTAC GCATATCCCC GCCGGGACAT TTGTGGGGAT TGTCGGAGAG
AGCGGATCCG GAAAAAGTAC TTTTGCAAAA CTTGTTCAGA GGCTCTATGC GCTTGAGGAT
GGACGAATCT ATATTGATCA CTATGATATC AGCAAGGTAG AGCTCAACTC GCTCAGATGT
CAGATAGGCA TTGTACCGCA GGATCCGATG CTTTTTGACG TGTCGGTCAA GGAGAACATC
TCCCTGACAA ATCCTGATGC AAGTGATGCC GATATTATCG ATGCGGCTAA AATTGCCGAG
GCTCATGAGT TTATCATGGC GTTGCCGACG GGTTACAATA CTCCTGTTGG TGAAAAGGGC
TCTTCGCTTT CCGGCGGTCA GCGACAACGT ATTGCCATTG CGAGAACCAT TTTGCAGAAT
CCCGGCCTTA TTATTCTCGA TGAAGCGACA AGTGCCCTTG ATCCTGATAC GGAAAGCAGG
TTGACAACCA ATATGATCAG GGCGTTCAGA GGTAAAACAG TTCTGTTTAT TACGCACAGA
CTTAATTCGG TCAAGGGGGC GGCAGTGATT CTCTGTTTCC ATGACGGGTG TATCGATGAG
TCTGGTACGC ATGAGGATCT GATGAAGAGA AAAGGTCGTT ATTATTCGTT GTTTCAGAAG
CAGTCGTTTT CAATGCCGGC GATGGAGGGG AATCAGTGA
|
|---|
| Protein sequence | MTTLDNTTPD IRKLLAAIPL FTDLTEEKMS MLLNVCSVAF YSIGKPVISK GALPDALYIV
SSGRVRSLFQ SGTGGVQTLR LLGAGDMFGW VSLVRNEPTE IVTASEETVC IRIPVSSVTM
VVNALPHLYD RLSVTTDPAE IGLLLEHIYS KDPKKESLLQ GSGFSCIKDL ALHLYQSAVV
VDSGFSRTVP QKQLRWFVSR SGDSAYSPGS EYHPPVNGIP ASLSLRLVGL DLSCIQESLA
AEIPAMPFSL PEADSPDLTD EASAGDDQLS SKRDRFSFHK GEAERKGGLK GLPFFKGRGV
VEETFACFQM LGKQLNVPIK KDLIQSIIGN QYARNGQLSL QDCGGVGVVL GLKAQVVSFQ
QDALPRLKVP ALVRWEKSFA VLYKASASEV VLAIPASSGI KVLAAREFWE SWEHKGEALV
LDARADTPEQ KFGFDWFAPS LKKYRNVLGE VMIASFFTQI MTLVNPLLFM IIIDQVIVRN
SYATLHVLGM FMLIIALLQA VLNSLRTYLF VDTTNRIDVA LGAEVIDHLL RLPLRFFEKR
PVGELSSRIG ELERIRQFLT GTALGVVLDA VFSVVYVIVL FAFSWKLALM ALSVVPLIGL
VTFLLSPVIR KQLREKAIKH GQTNAYLIEV LSGIQTVKSQ NIELRARWNW QEKYAAYVKE
GFKPVVTGTL ANSANSFLTQ ASGLIVIWAG AWLVLNQEMT LGQLIAFRII AGYITSPVMR
LAQLWQNFQE TGMSLERLAD IVDTPQEGGR DQLAQIPLPL IKGEILAENV SFRFRDNTPM
VLKNVSTHIP AGTFVGIVGE SGSGKSTFAK LVQRLYALED GRIYIDHYDI SKVELNSLRC
QIGIVPQDPM LFDVSVKENI SLTNPDASDA DIIDAAKIAE AHEFIMALPT GYNTPVGEKG
SSLSGGQRQR IAIARTILQN PGLIILDEAT SALDPDTESR LTTNMIRAFR GKTVLFITHR
LNSVKGAAVI LCFHDGCIDE SGTHEDLMKR KGRYYSLFQK QSFSMPAMEG NQ
|
|---|
| |