| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpha266_1547 |
|---|
| Symbol | |
|---|
| ID | 4569132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides DSM 266 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008639 |
|---|
| Strand | - |
|---|
| Start bp | 1756464 |
|---|
| End bp | 1757918 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639766129 |
|---|
| Product | RNA polymerase, sigma 54 subunit, RpoN |
|---|
| Protein accession | YP_911993 |
|---|
| Protein GI | 119357349 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGACT TAAAACTTCA ACTGAAACAA AAAGCGCTTC TTTCTGCCCA GCAGATTTTA
GGCAGTCAGC TACTTCACCT TCCACTTGCC AATCTTGAAC AAAGAATAGA TGAAGAGCTT
CAGGAGAATC CTTTGCTTGA AATGCTTGAT GAAGAGCGTG GCAGCGCCGA AGATCTTCCT
GTTGATGTGA ATTCTCAGGT TGGTGATGAA CTCGCTGATC CCGTAGAACG ATTCAGCAGC
ATAACCAGCA AGGAAGAGCG TGATTTTCCG ATCCGGAATG AACGGTATGA ACGAGGTTCG
ACTTCTTTCA ATAAGGCCGG TACCGGGGAT CGTTTTTTTC AGGCTGTTCA ATATGACAGT
TTTCATGAAC AGCTTCTTAA ACAGCTTGTC TTGCAGGAAG ATATCGGTGA AAAAGAGATC
ATGATTGCTG TGGAAGTGCT TGGCAATCTT GATCATGACG ATTATCTCAC TGAAGACATT
TCCGTCATAC GTGACGGTCT TCGGTTAAAT GATATCGATG TTTCCGAGCG TGAAGTAAAG
AAGATTATTG ACAGAATTTC TCGTCTTGAT CCGCAGGGTA TTGCCGTGAA GGATCTTCGG
GAACGTCTTC TTGTTCAGTT GGAAGCCGGA ACATTTGGAG CCCGCCAGAG CGCTTCAGCG
CTTGCAGTGA GAATTCTGAC GGTCTGTTTT GATGATTTTA TTCACAAACG CTATAATCGG
CTGCTTAAAA CAATCGATGC GTCCAAAAAA CAGATTGAAG CCGCACTTGA GATTCTCGGC
GAACTTGACC CTCATCCGGG CGGGGTTTTT CAAAACGAAT TGGGTCATTA CATTGTCCCT
GATTTTATTG TGAGTTATGA ACAGGGTGAA TTGACAGCGA TGTTGAATGA TACCAGCACC
CTTTCCGTCA AAGTTTCTGA CAGGTATGAG AGTATTCTGA AAAACAGGAA AGCCTCAAAG
GCGGAAAAAC AGTTTATTCG CAGTAATCTG CAGCGAGCAA AAGAGTTTAC CAGCGCCCTG
CAACTGCGGC GGCAGACGCT CATGAAGGTT ATTGAGGCGC TTTTGCACTA TCAATACGAT
TTTTTTGTTT CCGGACCATC GTTTCTGGTT CCGCTTGGCA TGAAAACGAT TGCGGAAGCA
GCTTCCCTTG ATATATCGAC GATCAGCCGA GCCGTTAACG GTAAATATGT ACAAACCCGT
TTTGGCGTTT TTGAACTGAA ATATTTTTTC AGCGCAGGAC TTGCGACAGA GGATGGTGAT
GATCTGTCGA GCAAAATTAT CAAGCAGTAC ATTGGAGAAA TGGTAAGCGG CGAGGATCCT
CAACAGCCGT TAAGCGATGA GCTTCTTACC GAATTGTTGA AAAAAAAGGG TATACATATT
GCCAGGCGAA CGGTTGCAAA ATACCGCGAA CAAATGCAAA TTTCAGTTGC AAGATTAAGG
AAAAAAATAT TTTAA
|
|---|
| Protein sequence | MGDLKLQLKQ KALLSAQQIL GSQLLHLPLA NLEQRIDEEL QENPLLEMLD EERGSAEDLP
VDVNSQVGDE LADPVERFSS ITSKEERDFP IRNERYERGS TSFNKAGTGD RFFQAVQYDS
FHEQLLKQLV LQEDIGEKEI MIAVEVLGNL DHDDYLTEDI SVIRDGLRLN DIDVSEREVK
KIIDRISRLD PQGIAVKDLR ERLLVQLEAG TFGARQSASA LAVRILTVCF DDFIHKRYNR
LLKTIDASKK QIEAALEILG ELDPHPGGVF QNELGHYIVP DFIVSYEQGE LTAMLNDTST
LSVKVSDRYE SILKNRKASK AEKQFIRSNL QRAKEFTSAL QLRRQTLMKV IEALLHYQYD
FFVSGPSFLV PLGMKTIAEA ASLDISTISR AVNGKYVQTR FGVFELKYFF SAGLATEDGD
DLSSKIIKQY IGEMVSGEDP QQPLSDELLT ELLKKKGIHI ARRTVAKYRE QMQISVARLR
KKIF
|
|---|
| |