| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpha266_1436 |
|---|
| Symbol | |
|---|
| ID | 4568997 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides DSM 266 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008639 |
|---|
| Strand | - |
|---|
| Start bp | 1638794 |
|---|
| End bp | 1640797 |
|---|
| Gene Length | 2004 bp |
|---|
| Protein Length | 667 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639766022 |
|---|
| Product | CRISPR-associated helicase Cas3 |
|---|
| Protein accession | YP_911888 |
|---|
| Protein GI | 119357244 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1203] Predicted helicases |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01587] CRISPR-associated helicase Cas3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAGGA TTGACCACTC AGCAGCCGGT GCGATACTTG CCACCGACAA AAACAAGTGG
ATCGGAAGAA TTCTTGGCTA TCTCATTGCC GGACACCACA CCGGGTTGCC GGATTGGCAC
AAGGAACCCG GAACCAAAGG TGACCCGCTG TCCGAGCGCT TGAGTAATCC CGAGCATCTG
ATGAATGCCT TGAAAGGTAA CCCTCCCGAA AACATTCTGA ATACGGCCTT GCCATCGTCG
TTGCCGTGTA AAAGCCAGGA TGGCGGTTCG GAGCTGGTAC ACCTTTGGAT TCGTATGCTT
TACTCCTGCC TCGTCGATGC GGACTTTCTC GATACCGAAC GGTTCATGAA TCCGGAGAAA
TCCGAACTTC GTCCGAACGA AGTTGATCTG GTAATGCTGA GAGAGCGTTT AGACGTGTAC
ATGGCCGCCA AAGAGAATGG AGCTTTGGAT ACGCCTGTAA ACCGGGCGCG AAAAGAGATT
CTTCGGGAGT GCCGCGATAA AGGGCGTTCG CTGGAACCTG GACTTTTTTC GCTGACCGTA
CCCACCGGCG GCGGCAAAAC CCTCGCATCG ATGGCCTTCG CGCTCGAACA CGCCATCAGG
CACGGCAAAA AGCGGATCAT CGTAGCGATT CCCTACACAA GCATTATTGA GCAAACTGCG
GCGGTTTATC GCGAAGTGTT CGGGGATGAC ACCGTGCTTG AACATCACAG CAATCTCGAT
CCGGCAAGGG AAACTGCCGA GTCTCGGCTT GCTACCGAAA ATTGGGATGC TCCGATCATT
GTGACCACCA ATGTGCAACT TTTCGAGTCA CTCTTCGCGG CCAGAAGCTC GGCGTGCCGC
AAGCTGCATA ACATCGTCAA TTCAGTTGTC GTGCTCGATG AGACGCAGAT GCTGCCTACC
GATTTTCTGC AACCGATCGT TTCCGTAATC AAATCGCTGA GTACGTATTT CAGGGCTTCG
GTCGTGCTCT GCACGGCCAC CCAGCCGGTT TTGAGCGGAA AGGTTGGAAC AGGTAAAGAT
ATTCTAAACG GTTTTGAGGG CGGCAGTGTG CGCGAATTGA TGTCCGATCC GGAAAAACTG
TTCAGCGTTT TCCAACGTGT CCGGGTGCGG ATGCTCGGCC AAGCCGGTGA ACGGTATGAG
TGGACGGAGA TTGCCAGGCA GCTTCAAGAG CACGAGCAGG TTTTATGCAT TGTCAACACC
CGCAAGGATT GCCGGGAGCT TCATGCGCAA ATGCCTGCAG GGACAGTTCA TCTCTCCGCC
CTGATGTGCC CGGAGCATCG CAGCAAGGTG ATTTCCGAAG TGAAGTCGAA ACTTATGACG
GGCGAGCTGG TGAGGGTTGT GAGCACGCAG TTGCTCGAAG CTGGCGTTGA TATCGATTTC
CCGACGGTTT ACCGCTCGTT CAGCGGCCTC GACAGCATCG CACAGGCAGC GGGGAGGTGC
AATCGTGAAG GAAGACTTGA GTGTGGCGAT GTGGTTGTGT TCAACCCACC AAAGCCTTCG
CCATCGGGCA GATTGATGAA AGCTGAAAAC GCAGCTCAGG AGCTCTTTCG CACGGATCCG
GAACTGGCTT CATCGCTCAT GCCGGAAGCG TTCAGTCGCT ATTTCATCCG CTATTTCAGC
GGTCTGAACG GATTTGACAC GGAGCAGATC ATGGACTTGC TCGCCGGAAA CGATGCCCTC
AAGTATCAGA TACAGTTTCG TACGGCAGCC AAGCGCTTCA AACTCATCGA TGATACGCTG
CAACACGGTA TTATCGTCAG ATATAGAGAC GGGAAAGCAA ATATTGTTGC CTTGATCGAT
CAACTGCGTT TTGGTGGTTC GAACCGAAAA CTGATGCGGC AACTTCAGCG CTATGCGGTG
AATGTATATG ATCCTGATCT GAAGCAACTG AGGGGAAATG GCCTGATCGA AGAGGTCAAC
GGTGTCTGGG TGCAAACGGC GGATAGCCTG TATGATCCGG TATTCGGCCT GAATATCGAC
GCCACGCTAA ATTTTGTCTA CTAA
|
|---|
| Protein sequence | MGRIDHSAAG AILATDKNKW IGRILGYLIA GHHTGLPDWH KEPGTKGDPL SERLSNPEHL
MNALKGNPPE NILNTALPSS LPCKSQDGGS ELVHLWIRML YSCLVDADFL DTERFMNPEK
SELRPNEVDL VMLRERLDVY MAAKENGALD TPVNRARKEI LRECRDKGRS LEPGLFSLTV
PTGGGKTLAS MAFALEHAIR HGKKRIIVAI PYTSIIEQTA AVYREVFGDD TVLEHHSNLD
PARETAESRL ATENWDAPII VTTNVQLFES LFAARSSACR KLHNIVNSVV VLDETQMLPT
DFLQPIVSVI KSLSTYFRAS VVLCTATQPV LSGKVGTGKD ILNGFEGGSV RELMSDPEKL
FSVFQRVRVR MLGQAGERYE WTEIARQLQE HEQVLCIVNT RKDCRELHAQ MPAGTVHLSA
LMCPEHRSKV ISEVKSKLMT GELVRVVSTQ LLEAGVDIDF PTVYRSFSGL DSIAQAAGRC
NREGRLECGD VVVFNPPKPS PSGRLMKAEN AAQELFRTDP ELASSLMPEA FSRYFIRYFS
GLNGFDTEQI MDLLAGNDAL KYQIQFRTAA KRFKLIDDTL QHGIIVRYRD GKANIVALID
QLRFGGSNRK LMRQLQRYAV NVYDPDLKQL RGNGLIEEVN GVWVQTADSL YDPVFGLNID
ATLNFVY
|
|---|
| |