| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpha266_1195 |
|---|
| Symbol | |
|---|
| ID | 4570063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides DSM 266 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008639 |
|---|
| Strand | + |
|---|
| Start bp | 1353459 |
|---|
| End bp | 1357031 |
|---|
| Gene Length | 3573 bp |
|---|
| Protein Length | 1190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639765789 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_911655 |
|---|
| Protein GI | 119357011 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTTG TACATCTTCA CGTTCATACC CACTACTCCA TGCAGAGCAG TCCTGTGTTT
CCGGCTGAGC TCTTTTCTGC ATGCAGTCGT TTCGGGATGA AAAGTATTGC CGTAACTGAT
TATTGTGCGG CATTCAATAT GCCCGAGCTT TTTGCGGAAG CGGAAAATGC CGGCATCAAA
CTGGTCATCG GAACAGAGCT CTATCTTCTT GAGTCGGCCT CCCACCATCA GACCCGGCAT
ACCGTATCTC CCTCTCTGAT TCTTCTCGTT CAGAATGATG AGGGGTACCG TCATTTATGT
ATTCTGCTGT CCCGTGCGGC AAAAGATGGT TTTATCAACG GCATGCCGCA TATCGAGTCA
TCTCTTCTCG AAGCCTGTCA TGGCGGGTTG ATCGCTCTTT CCGGATACAG TTCAGGCCGG
ATAGGCAAAG CGCTGCTTTC CGGTGCTCAG GAAGAGGCCG AATCGTTTGT GCGTTACTAT
AAAAGCGTGT TTGGCGACAA CTTCTATCTT GAGCTGCAGA ACCATAGGAT GCCTTTTGAC
GATGAGCTCC GCAAAGCCAC AATAGCCATT GCCGAAAAAT ACGCTGTTGA GCTTGTGGCA
ACAAATAACG TTCACTATCT GGAACGAAAG GATGCCGGTT GCTATCGGGC GATGGTTGCA
AACAGAACCA AGGAAAAACT TTCGAGCCAG AATCTTCAGG CCCATGCAGA GAGCGAATAC
TACCTGAAGT CACCCGAAGA GATGGCCATG CTTTTTCCTG ATATAAGCAA GGCGCTGACC
AATACGGTGA TTATTTCAGA TAAATGCACA TATGCTTTTA AAAAGAAAGA TCATCCGATT
CTTCCGCATT TCCACCTGCC CGAAGGGTTC AGTGATGAAG CGGCATACCT TCGCCATCTG
ACCTGGGAGG GAGCAAAGGA GAAGTATGCC GACAGCGGAG CTGACGGCAT TAGCAGTGAG
GATGTTGAGG CAAGAATCGA GCTTGAGCTC GGTGTTATCG AAAAAATGGG TTTCAGTTCC
TATTTCCTTA TTGTCAGCGA CCTTATTGCC GCATCACGCC GCCTTGGCTA TTCCGTAGGG
CCGGGAAGGG GATCGGCAGC AGGCAGTATT GTTGCCTATC TGACAGGTAT TACGCGAATT
GATCCGCTGA AATACAAGCT GCTGTTCGAG CGTTTTTTAA ATCCCGAGCG CTCTTCAATG
CCGGATATCG ACATTGATTT TACCCCGGTT GGAAAACAGA AGGTTCTGGA GTATACGGTC
GAAAAATATG GATCCGAAAG CGTTGCGAAA GTTATAGCGA TAGGAACTCT TGGTGCGAAA
GCGGCAATTC GCGATGCAGG CAGGGTGCTT GAGGTGCCGC TGCCGGTTGT CGACCGGCTT
GCCAAACTGG TGCCGACAAA ACCGGGTATT ACCCTTGAAA AAGCCATCAG CGAGGTCAGG
GAATTAAAAC AGTTTGTCGA GAGTTCACCT CAAACAAGAG AGCTCCTCGA CTATGCAAGA
GCACTCGAAG GAAGGGCAAG AAATGTCTCC ATGCATGCCG GCGCCGTTGT CATCACTGCC
GGTCCGCTTG AGGAGCAGGT GCCTTTGTAT GTTTCAAACA AGATTGAGAC CGAGGTGCGC
AAGTACGCTG ATGAGCTTGA TCTTGGAGAA CCCGATCCGG TTGTCAGCAA GACAGCCGAA
GTCGCCGATG AAAAGCAGGT GGTAACACAG TTTGACAAAA ACTGGATTGA AAAGGCCGGG
CTCTTGAAAA TAGATCTTCT CGGACTTGAA ACGCTTGCGG TTATTGACGA AACATTGCGC
CTGATACAGC GGCGGCACCA GCGCACTATC GAGCTTGAAA AGCTGCCTAT GAACGATCGT
AAAACGTTCA GGATTTTCCA GGAAGGCAAG ATGGCCGGTA TTTTTCAGTT CGAGTCTTCA
GGAATGCAGA ACTATATGAC CAGACTGCAA CCAACCCAGA TCGGTGATAT TATAGCCATG
AGCGCTCTTT ATCGACCCGG TGCGCTCAAC GCAAGGATCG ATGATCACCG CAATGCGGTC
GATCTGTTTG TAGACCGTAA ACATGGCAGA GAGGCCATAG ATTATATGCA CCCGATGCTT
GAGATCATTC TCAAGGAGAC ATACGGTGTT ATCGTCTACC AGGAACAGGT TATGCAGATT
TCGCAGGTTA TGGGCGGTTT TTCACTCGCA AAGGCTGACG ATCTTCGTAA AGCGATGGGA
AAAAAGAAGC CTGAAATCAT GAGCAAGTAC GAAGAGGATT TTATCAAAGG AGCCGTTGCG
CAGGGAGTAC ACGATGCGCT TGCCCGAAGA GTTTTTACAT TGATGGCGGA GTTTGCCGGA
TACGGTTTCA ATAAAAGTCA CTCTGCGGCA TATGGTGTTC TTGCCTATTG GACAGGATAC
CTGAAAGCAC ATTATACCAT TGAGTTCATG ACGGCAATCC TGAATAGCGA GATCGGTGAT
ATCGAACGCA TGAAACACCT GACCGACGAA GCAAAAAGCT TTGGCATCGC TACCCTTCCG
CCGTCAATCA ACAAAAGCGA CACCTTGTTT TCCGTCGAGG AACACAACGG GAAAGCATCG
ATTCGGGTTG GTCTGAGTGC CATCAAACAG GTTGGCGGCG CAGCCAGAGC AATTGTTACA
TCACGAATGA GAAAAAAACG AGAATTTATC AATCTCTTTG ATCTCACGGC ATCACTCGAT
CTAAGGCTTA TGAACCGCAA GGCTTTGGAG TGCCTGATAC TCTCCGGGGC GCTTGATGAG
ATAGACGAGC ACAGGGCACG TCTTATTGCC AATATTGACA AGGCCATCAA ATTCGGCCAG
GTGCAGAATC GTTCCGTTAC CCTTGGTCAG TGTGGTTTCT TTACTTCGGA GCATGGCGGA
GTTATGGAGG ATATTCATTA TCCCGATATG GATCCCGCTG ATCCGATGCC TGATTCGGAG
AAGCTTCTTC ATGAAAAAAA ACTTGTCGGG TTTTATCTGA GCCGTCATCC GCTTTCCACC
TACCGTCGGG ACTGGGAGGC CTTTACGACA CTTCAGCTTG ATGCAAAAGA GGTGACGCCC
GCAAGGCAGT ACAAGGTTAT CGGCGTTGTT GTTTCTGTTA AGCCTTATCA GGACAGGAAA
GGCAAGCCCA TGCTGTTTGG CGCTATAGAG GATTTTACCG GCAAATCCGA TTTCACGGTC
TTTGCAAGTG TTTTTGAGCA ATACGGGCAT TTCATCAAAC CTGAAGCGGT GCTGATGCTT
GTTGCTGAAG CTGAAGTAAG CGGAGGATCG CTGAAACTGC TCGTCAGGGA GGTTGTTCCG
ATAAAAAAGG TCAGGTCGGC TCTTGTGCGA AAAATTATTC TGAACATTGA TGCCGATGAT
CAGACCCAGC TTGAAAAGCT CGTCAGGGTT AAAAAAGTTT TTGCCGACCA TTCCGGTGGC
GTTCCTGTCG ATTTCGAGGT GAAGGTTCAG GCAGGGGAGG CGATGGAAAC GATCAGCATT
TTTGCTCGCA ACACACCGAT TGACGCGGAT GAAACAACGC TTGAAAAGCT TGAGGAAATT
CTTGGCCCTG ACAATGTCAG GATTTCAGGC TGA
|
|---|
| Protein sequence | MDFVHLHVHT HYSMQSSPVF PAELFSACSR FGMKSIAVTD YCAAFNMPEL FAEAENAGIK
LVIGTELYLL ESASHHQTRH TVSPSLILLV QNDEGYRHLC ILLSRAAKDG FINGMPHIES
SLLEACHGGL IALSGYSSGR IGKALLSGAQ EEAESFVRYY KSVFGDNFYL ELQNHRMPFD
DELRKATIAI AEKYAVELVA TNNVHYLERK DAGCYRAMVA NRTKEKLSSQ NLQAHAESEY
YLKSPEEMAM LFPDISKALT NTVIISDKCT YAFKKKDHPI LPHFHLPEGF SDEAAYLRHL
TWEGAKEKYA DSGADGISSE DVEARIELEL GVIEKMGFSS YFLIVSDLIA ASRRLGYSVG
PGRGSAAGSI VAYLTGITRI DPLKYKLLFE RFLNPERSSM PDIDIDFTPV GKQKVLEYTV
EKYGSESVAK VIAIGTLGAK AAIRDAGRVL EVPLPVVDRL AKLVPTKPGI TLEKAISEVR
ELKQFVESSP QTRELLDYAR ALEGRARNVS MHAGAVVITA GPLEEQVPLY VSNKIETEVR
KYADELDLGE PDPVVSKTAE VADEKQVVTQ FDKNWIEKAG LLKIDLLGLE TLAVIDETLR
LIQRRHQRTI ELEKLPMNDR KTFRIFQEGK MAGIFQFESS GMQNYMTRLQ PTQIGDIIAM
SALYRPGALN ARIDDHRNAV DLFVDRKHGR EAIDYMHPML EIILKETYGV IVYQEQVMQI
SQVMGGFSLA KADDLRKAMG KKKPEIMSKY EEDFIKGAVA QGVHDALARR VFTLMAEFAG
YGFNKSHSAA YGVLAYWTGY LKAHYTIEFM TAILNSEIGD IERMKHLTDE AKSFGIATLP
PSINKSDTLF SVEEHNGKAS IRVGLSAIKQ VGGAARAIVT SRMRKKREFI NLFDLTASLD
LRLMNRKALE CLILSGALDE IDEHRARLIA NIDKAIKFGQ VQNRSVTLGQ CGFFTSEHGG
VMEDIHYPDM DPADPMPDSE KLLHEKKLVG FYLSRHPLST YRRDWEAFTT LQLDAKEVTP
ARQYKVIGVV VSVKPYQDRK GKPMLFGAIE DFTGKSDFTV FASVFEQYGH FIKPEAVLML
VAEAEVSGGS LKLLVREVVP IKKVRSALVR KIILNIDADD QTQLEKLVRV KKVFADHSGG
VPVDFEVKVQ AGEAMETISI FARNTPIDAD ETTLEKLEEI LGPDNVRISG
|
|---|
| |