Gene Cpha266_1052 details

Gene Information

• Locus tag: Cpha266_1052
• ID: 4571014
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium phaeobacteroides DSM 266
• Kingdom: Bacteria
• Replicon accession: NC_008639
• Strand: -
• Start bp: 1191599
• End bp: 1195114
• Gene Length: 3516 bp
• Protein Length: 1171 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 639765655
• Product: patatin
• Protein accession: YP_911523
• Protein GI: 119356879
• TIGRFAM ID: [TIGR03607] patatin-related protein

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCACCA ACTCCCAACA GAACCTGAGT CATCAGCTCA CCAAAGAGAT CCGCTTTGCC 
GTTGTCCTCT ATGGAGGGGT TTCTCTTGCC ATCTATATGA ACGGCATTGC CCAGGAACTG 
CTCAGCCTTG CAAGATCAAC AAGAGATGAT GCTTCCGGAT CACCAGAGGC CACAGAGGCT 
GTTTACCGGG ATATTGCCGA TTACCTCTCA AAGAAAAGCA AGGGAGCGTT CAGACATAAA 
TTCATTGTCG ATATTATTTC CGGCACCTCT GCGGGAGGAA TCAACGGCGT CTGCCTCGCC 
AAAGGACTCG CCTGTGGAGT CAAAAACCTT AAGGCGCTTG AAAATACCTG GCTTGAAGAG 
GGGAACATCG ATACGCTGCT CAATGACCCG AAATCCGAAC TCGACCTATT CTGCTCGAAA 
GAGCCGAAAA CCTCTCTTCT GAACAGCCAG CGCATGTATG GCAAGTTGCT TGACGCATTC 
AACCGGATGG AAAAGGATGT CACGCCCGAC GCAGTCACCC TTGTCAACGC ACTTGACCTT 
TTTGTAACGG CTACCGATCT GAGAGGTGTT GAAGTCCCGA TATCCCTGAG TGACGGAAAA 
GCCGATGAAC ACATTTACAA ACATGCATTC CACTTCCTTT TCAGAAAAAA CAGCCGTAAT 
GGCACTGATC CTGACAAGTA CAACCATTTC AGCAGCGACT ACAACCATAT TCTTGCATTT 
GCCTCCCGCT GCACCTCTTC TTTTCCCTTT GCGTTCGAGC CAATGTGCCT GAACGATATG 
CTTGACTATC TCAAAACAAG CCGACCAAAG GAGTACGTTG CCTGCTGCCG ACAGATGGAA 
AAATGGCGAA GCAGATTTTT CAGGGCATAC AACGAACTTA CCACGGATGA ATTGAACGCC 
CGCGAATTTG CGGATGGCGG TTTTCTTGAT AATCGTCCTT TCGGACACGC CATACAGGCA 
GTTCACGCCC GACATGCCAC CTGTCCGATA GAGCGTAAAC TGCTCTTTAT TGATCCTTCA 
CCTGAAAAAT CTTCCGCTGA ATCTGATACG AAAAAAAAAC AAAAAATATC ATTCATCAAA 
AACACCGCTC TGGCTACCAC AACCCTGCCA AGATATGAAA CCATCCGTGA GGAAATTGCA 
GGTCTCAAAC AGCGAAACCG ATGGATTGCC ACGGTCAATC AGATTGTTGA AACAATAAGT 
GACATCAATA AAAAACGACT GGAGGAGATC ATTCTCCAGT CGTTTATCAA CTATATCAAG 
GGGTTGAATA CATCGCCAAC AGACCAGAAA ACACGGTTTA TTCTTCGGAA AATCGAGGGG 
AATCGTCATA AGTCACAACC TGACATTTCG CTGCGTTCGC TGACCGAAAA CCTGTCGACC 
CTCAATATTC TTGCCGGCAA TACCGTACTC GCTGAAAACG AAGTCGCGCC TGCAAGAGAA 
TCGTTCTGGA AAGCGATCAT TGCAGATAAC AAAAAGCAGG GCGACGCAGG TGCAAAAAAA 
GCGTTGAAAA AGCTTGATGA GCGAACCCTT GACAACATCG CTCTTTTGGC CGACAAGAGC 
GATGTTGAAG ATACACCGGG TTTTATCACA CAGGACCTCA ATGATTTGAT CGCACTGTAC 
GGTGATGGAT ACAGCGCCTA TCATTATACA AGAATGAGCG CCCTCGACGA TCTGCTGACA 
CTTGTCATTA CAAGAGCCGC CGAAATCAGC GATGAATCCG ATCTTTCTCT TGCCGTACGG 
CGCCTTGTCG AGGCCTGGAG AAAAAGTCGC TATCAACCCT ACCGCAATCA TACAGATGAA 
GGGGATGATC CGGAAAAAAA AGAACTTGAA ACCGTTTATC TATCCAACTA CGATATCGCA 
TTTCGGCTTC GAAGGCTTGA TTATTTCAGA AAACTTCTGC AAAAAGCAAT CGTTAACAAT 
AATGCCGAAG ATATTATTTT CAGAGAACAT GCGCTTTCCG TCCCTGAACG AGATGCCATT 
AACACCTTTT ACGAAACTGT CTGCAAGACA CTTGAAGGCG TCTACAACTT AAGAGATTTT 
CTCATCAGGG AAGGAAAGGA AAATCCTGCC GCGAGCATGG TCAACGAATG GAAATCGTGC 
TTCAAAAAAG GATCTCCTGG CATCAAAACG TTTTTAAACG ACGTTCTTCT TACCTGCGAC 
TGTTCAGCAC CTCTCCCGGC TTTCGACCTG AAAAAAGATC CGTGCGACGC AACATCGGAT 
AAAACCGATG AATTCCGCCA ATTGCTGGAT AACGCTGGTA TAAGGGCCGG CATTAACCCG 
GATTTTGCCG GGTTGCCTGA TATGATGAAC AAACTTATGA CCTGTATTCA CACGGCGGTC 
ATGACCGGAA AGGAATTGGA GGGTAATACC GAAAAAGACC CATCGATAAC AGGCACCATC 
GAGGCACGGA AGAATATCAA CATAGCGCTC GATCGGCTCT CGGCAGTCAA TAATGAAATA 
GCAGCCCACC TTCTCTTCAT CTATGATTAT GGCTACGATC TTCATGATAT CACAACCTTT 
CCGCTTTTTT CCGGTGGCGA ATACGGCGAA GGGTCCAATA TCGGCATTTA CAGAATCAGC 
CCTCTTGACG CAACAAGTCT CTCACCGGAA TACAGCCTGA ATAAGAACAA CGGAGGCGAA 
TCATCAAAAC TTGCAGGCAC TGCGCTCGGG GCGTTCGGGG CCTTTCTTGA TCGTAACTGG 
CGCAGAAATG ACATTATGTG GGGAAGACTC GACGGTGCCG AAAGAATCAT TACTGCCCTC 
CTGCCAAATC ACGAAAATCA GGAGGCTCGC CAGAACTTTA TTGACAAAGC TCATCGGGCC 
ATCATTACTG ATACGCTCAA CACGTGGCTT CCCGAGCTCA AGCGTATTCA GGTTCCATCG 
CACAGGGAGC TCCATTTAAT CTCGATACTC GAAACGATCG GGAATTCGCT TGCAGGCAAG 
GACGACTGGA AACACGTTTT TAAAACGTAC TACACCATTG ATCACGAGCC AGAGGCGGCT 
CCGAATCTTA AACGGGTAGG CAGGTCGTCT GCTATAGTCT CTCAGATGAT TAATGGAGTT 
AACGGAGACA ATGGATCAGG AAAAAAAATC AGCAATATTC TCAAGATGTT CAGCACCATC 
CTTCTGGGTA TGCTCGATTT CACAACACCG AAAAGCCTGA AACAGGTTCT CCTGAACTAC 
TGGCTGCAGT TGCTGTTTCT CATTGCGCTG CTTCTGATTG TGACGGGAAC CATGGTCAAG 
GGGCTGAAAG AAACTGCTCT TCCAGGAGCA TACCTGCTTT TAGCGGTAGT GGCGATCTGG 
ATCACAAAAA CAGTGATTGA AAACCTGATC CACCGTATGC ACAATAAGCC CTGGAAAAAC 
ATAACGAAGG AGGTTTTCAA ATACCTGGCA TCAGCAGTGC TGCTGTTTAT CGTCTTTATC 
AGCCTTCAAG CCTTTATCGA TATCTGGAGC TCTTTTTCGA AGAGTTTTAT AACGATCCTG 
CTCGGACTCT GGAACGACCT CTTTATCAAG CAATAG 

 

Protein sequence

MTTNSQQNLS HQLTKEIRFA VVLYGGVSLA IYMNGIAQEL LSLARSTRDD ASGSPEATEA 
VYRDIADYLS KKSKGAFRHK FIVDIISGTS AGGINGVCLA KGLACGVKNL KALENTWLEE 
GNIDTLLNDP KSELDLFCSK EPKTSLLNSQ RMYGKLLDAF NRMEKDVTPD AVTLVNALDL 
FVTATDLRGV EVPISLSDGK ADEHIYKHAF HFLFRKNSRN GTDPDKYNHF SSDYNHILAF 
ASRCTSSFPF AFEPMCLNDM LDYLKTSRPK EYVACCRQME KWRSRFFRAY NELTTDELNA 
REFADGGFLD NRPFGHAIQA VHARHATCPI ERKLLFIDPS PEKSSAESDT KKKQKISFIK 
NTALATTTLP RYETIREEIA GLKQRNRWIA TVNQIVETIS DINKKRLEEI ILQSFINYIK 
GLNTSPTDQK TRFILRKIEG NRHKSQPDIS LRSLTENLST LNILAGNTVL AENEVAPARE 
SFWKAIIADN KKQGDAGAKK ALKKLDERTL DNIALLADKS DVEDTPGFIT QDLNDLIALY 
GDGYSAYHYT RMSALDDLLT LVITRAAEIS DESDLSLAVR RLVEAWRKSR YQPYRNHTDE 
GDDPEKKELE TVYLSNYDIA FRLRRLDYFR KLLQKAIVNN NAEDIIFREH ALSVPERDAI 
NTFYETVCKT LEGVYNLRDF LIREGKENPA ASMVNEWKSC FKKGSPGIKT FLNDVLLTCD 
CSAPLPAFDL KKDPCDATSD KTDEFRQLLD NAGIRAGINP DFAGLPDMMN KLMTCIHTAV 
MTGKELEGNT EKDPSITGTI EARKNINIAL DRLSAVNNEI AAHLLFIYDY GYDLHDITTF 
PLFSGGEYGE GSNIGIYRIS PLDATSLSPE YSLNKNNGGE SSKLAGTALG AFGAFLDRNW 
RRNDIMWGRL DGAERIITAL LPNHENQEAR QNFIDKAHRA IITDTLNTWL PELKRIQVPS 
HRELHLISIL ETIGNSLAGK DDWKHVFKTY YTIDHEPEAA PNLKRVGRSS AIVSQMINGV 
NGDNGSGKKI SNILKMFSTI LLGMLDFTTP KSLKQVLLNY WLQLLFLIAL LLIVTGTMVK 
GLKETALPGA YLLLAVVAIW ITKTVIENLI HRMHNKPWKN ITKEVFKYLA SAVLLFIVFI 
SLQAFIDIWS SFSKSFITIL LGLWNDLFIK Q