| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpha266_0776 |
|---|
| Symbol | |
|---|
| ID | 4570023 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides DSM 266 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008639 |
|---|
| Strand | - |
|---|
| Start bp | 884345 |
|---|
| End bp | 887512 |
|---|
| Gene Length | 3168 bp |
|---|
| Protein Length | 1055 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639765371 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_911252 |
|---|
| Protein GI | 119356608 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGGAT TTTTTATCGA GCGACCCGTC TTTGCCTGGG TGATCTCCAT CTGTATCATG
CTCGGCGGAA TCATAGCCAT CAATATCCTG CCGGTCGAGC AATATCCGCG CATCGCGGCG
CCGACCATCA ACATCAGCGC CAGCTATCCC GGCGCATCTT CCGAAGCGGT TGAAAACAGC
GTGACGCAGG TCATCGAACA GGCTCTTACC GGTATCGATC ATCTCCGCTA CTTCAGCTCA
GGGAGCGATT CGAACGGCAA CGTCACCATC ACGGTGACAT TCGAACCTGA AGCCAATCCC
GATATTGCCC AGGTGCAGGT GCAGAACAAG TTGCAGTCGA TCATGTCGAA CCTGCCCCAA
CAGGTACAGC AGCAGGGTAT CAAGGTGACC AAGGGAGATA CCGGCTTTCT GATGGTCGTG
GGCGTCTATT CGGACGATCC CCGGATCGAT GAATACGCGA TGAACGATTT CATCAACTCG
AAGCTCCTCG ATCCGCTGAG TCGCGTACCC GGCGTCGGTA ACATCCAGGT GTTCGGGCAG
CCCTATTCGA TGCGTATCTG GCTTGATCCC CACCGCATGG CGAGCTTCAA CCTCACCACC
ACCGAGGTCC AGACAGCCAT CACGGCACAG AATGCCGACG TCTCCGCCGG CCAGCTGGGA
GGAACGCCAT CGGTTCCGGG CCAGCAACTG AATGCCACCA TTACAGCGCA GTCGCGCCTG
AAAAGCGTCG GAGATTTCGA AAAGATCATG CTGAAGGTCA ATACCGACGG CTCCCAGGTC
CGCCTAAGGG ATGTCGCCCG CGTCGAACTC GGCGTACAGA ACTACGACAT GACCACGCGC
TTCAACGGCA AACCGGCTGC AGGCATGGCC ATCACCCTGG CGACCGGGGC AAACGCCCTG
AACACCGCCA ATCTGGTCAA AGCGAAAATG ACTGCCCTTA AACCGCTGCT CCCGCCGGGT
GTGCAGATCG TTTACCCATT CGACACGACA CCATTCGTCA AGACATCGAT CGAAGGGGTT
GTCCATACCC TGATCGAGGC GGTCATCCTC GTCTTCTTCG TCATGTTCCT GTTTCTCCAG
AACTTCCGCG CCACGCTGGT CCCCACCATC GCGGTTCCTG TCGTGCTGCT GGGTACCTTC
GGGGTGATGT CGGTTTTCGG CTTCTCCATC AACACCCTCA GCATGTTCGC CATGGTGCTC
GCCATCGGAT TGCTTGTCGA TGACGCCATT GTCGTGGTAG AGAACGTCGA ACGCATCATG
GAAGAGGAGC GACTCTCCCC GCTGGAGGCG ACAAAAAAAT CCATGAAGCA GATCTCCAGC
GCGCTGATCG GCATCGCCCT TGTGCTCTCG GCCGTATTCG TGCCGATGGC CTTCTTCAAA
GGGTCCACGG GAACGATCTA CCGTCAGTTC TCGATCACCA TCGTCTCAGC GATGCTGCTC
TCGGTTCTGG TTGCGCTGAT CCTGACACCG GCTCTCTGTG CCAGCCTCCT CAGGCCGGTC
AGAGCGGATG GAAATCTTTA CGGCACTGGT CCCCTCGGGC GCTTTTTCGC ATGGTTCAAC
GGCAAGTTCA ACCGCAACCG GGAGCGCTAT GTCAAGGGAG CCCGTGTCAT GACGGAAAGC
GTCAACCGCT CGCTGCTGGG ATTTATGCTG GTCGTGGTGC TGCTTGTCAT CGTCCTCTTG
CGCATCCCGA CCGCTTTCCT GCCGGACGAA GATCAGGGGT TTCTCTTCGT CCAGCTTTCC
ACCCCATCCG GAGCGACCAA GGAGAGAACG CTCGAAAGCG TGAAGACAAT GGAACGCTAC
CTTCTCAATC AGGAAAAAGA GAACATCGAA AGCGTCTTCA GCGTGACCGG TTTCAGTTTT
GCGGGCCAGG GCCAGAACTC GGCCATGGGT TTCGTCCAGC TCAAGGACTG GTCCAGTCGA
AAGAATAAGG GTCAGGATGT TGCATCGATC GCCGGAAGAA TCATGGGCGC CATGTCGAGC
GTGAAGGACG CCATGATCTT TGCGTTTTAC CCTCCGGCCG TCATGGAACT CGGCAACGCC
TCCGGTTTTG ACCTTCAGCT TGTAGACCGG ACAGGCAAAG GTCATGAGGC TCTCATGGCC
GCCCGAAACC AACTGCTGGG AATGGCTGCG AAAAATCCCT CCCTGAGCGG CGTGCGTCCC
AATGGACTTG AAGATGTGCC ACAGTTCAAA ATCGATATCG ACCACGAAAA GGCAAGCGCC
TTCGGGGTAT CGATCGCCGA CATCAACTCA ACGCTGCAGA CCGCCTGGGG TTCGAGCTAC
GTGAACGATT TTCTGCATGA TGGCCGCATC AAGAAAGTGT TCATGCAGGG AGACGCGCCG
TACCGCATGA ACCCGTCGGA CGTCGACATC TGGCACGTCC GGAACTCGAA TGGTGACATG
GTTCCCTTCT CATCGTTTTC CTCGGGTCGG TGGAGCTTCG GTTCGCCAAA ACTCGAACGA
TTCAACGGCA TATCATCGGT CAATATCCAG GGAGCCCCGG CGCCAGGCGT AAGCTCGGGC
GATGCCATGG CCGTCATGGC GAAACTGGCA GGAACACTCC CCGAAGGTTT CGGTATCGAA
TGGACCGGCC TTTCCTACGA AGAACGTGCT GCCGGCCAGC AAACAGTGCT GCTCTACACG
CTCTCCCTGC TTTTCGTCTT TCTTTGCCTG GCCGCCCTTT ACGAAAGCTG GAGCGTACCG
ATCGCCGTCA TGCTGGTAGT CCCGCTCGGT GTTCTGGGCA CCGTTCTGGC GACATTTCTC
TCAGGTCTTT CAAACGACGT CTACTTCAAG GTCGGCCTGT TGACAACCGT CGGTCTGACG
GCGAAAAACG CCATCCTTAT CGTGGAATTC GCCAAAACCC TCTACGAAAG CGGCATGAAC
CTGCAGGAAG CAGTCCTCTC TGCAGCAGGT CAGCGACTTC GACCGATCGT CATGACCTCC
ATGGCATTCA TCCTCGGCGT CACACCGCTC GCCTTCTCCT CCGGAGCAGG ATCGGCAAGC
CAGCACGCCA TCGGCATCGG CGTGATCGGA GGAATGTTGT CCGGTACGAT ACTGACGATC
TTCTTTGTGC CTCTCTTCTT CATCCTCGTG CAATCCCGGT TTGCCCGAAA GACGGCAACC
GACACTGCAG TAAACCAAAA CGACAAGGGA TCGAACCATG AACACTAA
|
|---|
| Protein sequence | MSGFFIERPV FAWVISICIM LGGIIAINIL PVEQYPRIAA PTINISASYP GASSEAVENS
VTQVIEQALT GIDHLRYFSS GSDSNGNVTI TVTFEPEANP DIAQVQVQNK LQSIMSNLPQ
QVQQQGIKVT KGDTGFLMVV GVYSDDPRID EYAMNDFINS KLLDPLSRVP GVGNIQVFGQ
PYSMRIWLDP HRMASFNLTT TEVQTAITAQ NADVSAGQLG GTPSVPGQQL NATITAQSRL
KSVGDFEKIM LKVNTDGSQV RLRDVARVEL GVQNYDMTTR FNGKPAAGMA ITLATGANAL
NTANLVKAKM TALKPLLPPG VQIVYPFDTT PFVKTSIEGV VHTLIEAVIL VFFVMFLFLQ
NFRATLVPTI AVPVVLLGTF GVMSVFGFSI NTLSMFAMVL AIGLLVDDAI VVVENVERIM
EEERLSPLEA TKKSMKQISS ALIGIALVLS AVFVPMAFFK GSTGTIYRQF SITIVSAMLL
SVLVALILTP ALCASLLRPV RADGNLYGTG PLGRFFAWFN GKFNRNRERY VKGARVMTES
VNRSLLGFML VVVLLVIVLL RIPTAFLPDE DQGFLFVQLS TPSGATKERT LESVKTMERY
LLNQEKENIE SVFSVTGFSF AGQGQNSAMG FVQLKDWSSR KNKGQDVASI AGRIMGAMSS
VKDAMIFAFY PPAVMELGNA SGFDLQLVDR TGKGHEALMA ARNQLLGMAA KNPSLSGVRP
NGLEDVPQFK IDIDHEKASA FGVSIADINS TLQTAWGSSY VNDFLHDGRI KKVFMQGDAP
YRMNPSDVDI WHVRNSNGDM VPFSSFSSGR WSFGSPKLER FNGISSVNIQ GAPAPGVSSG
DAMAVMAKLA GTLPEGFGIE WTGLSYEERA AGQQTVLLYT LSLLFVFLCL AALYESWSVP
IAVMLVVPLG VLGTVLATFL SGLSNDVYFK VGLLTTVGLT AKNAILIVEF AKTLYESGMN
LQEAVLSAAG QRLRPIVMTS MAFILGVTPL AFSSGAGSAS QHAIGIGVIG GMLSGTILTI
FFVPLFFILV QSRFARKTAT DTAVNQNDKG SNHEH
|
|---|
| |