Gene Cpha266_0622 details

Gene Information

• Locus tag: Cpha266_0622
• ID: 4569333
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium phaeobacteroides DSM 266
• Kingdom: Bacteria
• Replicon accession: NC_008639
• Strand: +
• Start bp: 697686
• End bp: 699659
• Gene Length: 1974 bp
• Protein Length: 657 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 639765219
• Product: ABC transporter related
• Protein accession: YP_911101
• Protein GI: 119356457
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.00774379
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCCAT TGCTTGAACT TCTTGATGTT CACCGGACGT ATCAGATAGG TGAAACCACC 
GTTAATGCGT TGCGTGGTGT TTCCCTGACC ATAGATCGAG GAGAGTTTGT TGCGATAATG 
GGGGCGTCAG GATCAGGAAA ATCCTCTCTG CTTCAGATTC TTGGTCTGCT CGATAATCCG 
GACAAGGGCG AGTTCAAGAT TTTGGGCAAC AACGTCAATA CCCTTTCTGA AGATGAACAG 
GCCGGAGTGC GTAATAACGT AGCAGGCTTT GTCTTTCAGC AGTTTCATCT GCTCAAGCGT 
ATGACCATTG TTGATAATGT GCGGCTCCCT CATATATACA GTGGACTGAA AGGAGATTTT 
CGTCAGGAGG CCATAGCCCG TCTGAAGCTG GTTGGACTTG AAGAGCGGAT TGATCATACG 
CCAAATCAGC TTTCTGGAGG TGAGCAGCAG CGCGTGGCAA TAGCGAGGGC GCTCGTTCGC 
GACCCGTTGA TTATCTTTGC TGACGAGCCT ACAGGAAACC TTGATTCAAA AAATTCCGCT 
GAGATCATGA AGATCTTTAC AGCTCTTCAT GAAGAGGGCA AGACCATCAT TATGGTTACG 
CATGAAAATG ATATTGCCGC ATATGCCTGT CGTGTCATTA TCATGAAGGA TGGTCTGATT 
GTTTCCGATG AACGCAAGGC GGAAATGCAG CCTTCACGCG CAGTTACCGG AGAGAGCGCG 
TTCGATATTT CTGGTTCCGG AAAGGGTTCG ATATGGCAGG ATGGCCGGTT TACCGGATTT 
ATGGCACAGG CCTTTCAGTC CATTCTTGCC AACAAGATGC GCACTTTTCT CTCCGTGCTT 
GGCATTTTTG TCGGGGTTGC CTCGGTGATT GCCATGATGG CGCTTGGTGA GGGAGCAAAA 
TCGGCCATGC AGGAGCAACT GAAATCCATG GGTTCGAATA TGCTTTCGAT CAGAGGGGGA 
TCGGCGAAAA TCCGTGGTGC GGCCCAGGGA GCAGGTGCTG TTGCCCGTTT TTCCTTTAAT 
GATGTCAATG ATATTGCATC GCTCGGCAAG CTGGTTAAAA ATGCCTCCGG AGTAGTCAAC 
GGCAGCGCAA GGATCGTTTA TGGCAACAAA AACTGGAGTT CGACGTTGAC CGGAGTAGGG 
TTCGATTACG GTACCATGCG CGCTTCGATA CCTGCCATCG GAAGGTGGTT TACCCGTGAA 
GAGATCCAGA TACGCGAAAA ATCGGCCATA ATCGGCGTTA CCGTTGTCAA GGAGATTTTT 
GGAAGCAGCA ATCCGATTGG TAAAACCATC AAGATAAACC GAATTAATTT CAAGGTTATC 
GGTATCGCTC CAGCAAAGGG GTTTTCAGGA CCGCAGGATG AGGATGACGT TGTGATCATA 
CCGGTAACGA CCGCGATGTA TCGTGTACTC GGAAAGGATT ATCTCAGCAG TATCTTTGTT 
GAGGTCGCTT CTCCAGGCCT GATGGGACAA GCCAAAACCG CTATCACTGA GCTGATTCGT 
AAAAAACACC GACTTGAAGA GGGTGATGAC TCTTTCAATA TCAGGGATAT GACGGAAATC 
CAGAAGATGC TCAGCAGTAC AACGCAAACC ATGAGCCTTC TTCTTGGTTC GATCGCAGCG 
ATTTCCCTGC TTGTTGGAGG AATCGGCATC ATGAATATCA TGCTGGTGTC CGTTACCGAA 
CGAACCAGAG AGATTGGTTT GAGAAAGGCT ATCGGGGCGA GGAAAAACGA TATCATGCTG 
CAGTTTCTTA TCGAATCTGT GGGCATGACC ATCAGTGGAG GTTTGATCGG GGTTTTCGCG 
GGGGTCGGCA TCTCCCTGAT TCTTGCCTTT TTTGCCGGCT GGGCGGTGAA AACTTCTCTG 
TTATCGGTTG TGCTTGCGAC AACTTTTTCA GCACTTATCG GCGTCTTTTT CGGCCTGTGG 
CCTGCAAGAA AAGCTGCAGC ACTCAAGCCT GTTGAAGCAT TGCGGTATGA GTAA 

 

Protein sequence

MNPLLELLDV HRTYQIGETT VNALRGVSLT IDRGEFVAIM GASGSGKSSL LQILGLLDNP 
DKGEFKILGN NVNTLSEDEQ AGVRNNVAGF VFQQFHLLKR MTIVDNVRLP HIYSGLKGDF 
RQEAIARLKL VGLEERIDHT PNQLSGGEQQ RVAIARALVR DPLIIFADEP TGNLDSKNSA 
EIMKIFTALH EEGKTIIMVT HENDIAAYAC RVIIMKDGLI VSDERKAEMQ PSRAVTGESA 
FDISGSGKGS IWQDGRFTGF MAQAFQSILA NKMRTFLSVL GIFVGVASVI AMMALGEGAK 
SAMQEQLKSM GSNMLSIRGG SAKIRGAAQG AGAVARFSFN DVNDIASLGK LVKNASGVVN 
GSARIVYGNK NWSSTLTGVG FDYGTMRASI PAIGRWFTRE EIQIREKSAI IGVTVVKEIF 
GSSNPIGKTI KINRINFKVI GIAPAKGFSG PQDEDDVVII PVTTAMYRVL GKDYLSSIFV 
EVASPGLMGQ AKTAITELIR KKHRLEEGDD SFNIRDMTEI QKMLSSTTQT MSLLLGSIAA 
ISLLVGGIGI MNIMLVSVTE RTREIGLRKA IGARKNDIML QFLIESVGMT ISGGLIGVFA 
GVGISLILAF FAGWAVKTSL LSVVLATTFS ALIGVFFGLW PARKAAALKP VEALRYE