| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpha266_0225 |
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| Symbol | |
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| ID | 4570712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium phaeobacteroides DSM 266 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008639 |
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| Strand | + |
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| Start bp | 249984 |
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| End bp | 252017 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 639764825 |
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| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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| Protein accession | YP_910716 |
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| Protein GI | 119356072 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCAAT ATCGTCGGCG TTTTACACGT GAAGTACCTT TTGGAAAGAT TGCTCTGGGC
GGATATATGC CTATAAGAGT TGAGTCGATG ACCAATACCC ACACACTTGA TACGGTGGCA
ACGGTTAAAC AGTGCCGTCG TCTTTATGAG GCGGGTTGTG AAATCATACG ATTAACCGTC
CCGACTGAAC GAGATGCTGA AAATCTGAGG TCTATAAGGG ATCAGCTCCG AAGTGACGGT
ATTGATACGC CTCTTGTTGC CGATATTCAT TTTTCCTCTC GTGCCGCATT CAAGGCTGTC
GAGTTTGTTG AAAACATCAG AATCAATCCT GGCAATTATG CCACAAAGCA GAAGTTTTCG
GCAGAAACTT ATACTGACGA CGAATACCAG GAAGAGATTG AACGGGTTCG CAAGGAGTTT
CTTCCCCTGG TTTACAAGGC TCGTGAATTT GGGGCATCCA TGAGGATCGG TACCAACCAT
GGATCTTTGT CCGATCGTAT AGTGAGCCGA TATGGCAATT CTCCTGAGGG TATGGTTGAG
GCTGCCCTGG AGTTTGCGAG AATCTGTGAA GAGGAAGGAT ATCATGATGT CTTGTTTTCG
ATGAAATCTT CCAATGTCAA GGTGATGATA CAAGCGTATC GTCTGCTTGC CGTCAAGGCT
GACGCTGAGT TGCGTTATGC TTATCCCCTT CATCTTGGCG TGACTGAAGC AGGCGACGGC
GATGAGGGTC GTGTCAAATC GGCTATGGGA ATTGGTGCCC TTCTGGAGGA CGGCCTTGGC
GATACCATAC GAGTTTCGTT GACGGAAGAT CCTGTAAATG AGGTCCCGGT AGGTTTTGCC
ATTGTGAAAA AATACAATGA TCTGCAATTG ATAAGAGGCG AAAACGGGCA TGTTCCGATA
AAGCAGCTCA TTGAAAATCA AGGCTCTTCT TTCACGAATG AGTTGCCGCC TTTTGACCCT
TTCAGTTATC AACGCAGGAT TTCCCGTTCT TTTTTTGTCG GAGGGTTTGC CATAGGAGGT
GATTCGATGC CGAGGGTTGA AACCGAGGCC GTAATTCCCT TATGTCGGCC TGAAGAGCTG
TTTCATGAGA TCATGCAGCG ACTTCTTCCC GAAGAGTCAA TTGACGCCAT TCGGTCAGAA
TTGGTTGGTG TTCGTGTCAA CACCGTTGAA GATCTTGAAC TTCTTGATGA GCTCTTAAGC
CGACTCGGCG AAGCAAAACG TTTTATTACG GTTTCAACAA AGGATATCGA ACTGTTTTTT
CGGCTTCTTG ACAAGGTGGA AAAGGTAAGA CTTGATATTA CGGAAGGCGA GATGCTTGAC
AGGAATATTT TCGATCGTCT GACTAATGAT CGACTCGCAT CGGTAGAGTT TTGCTTTCTT
CATGAAACAA GCGGGGCCGG TGTGCCGGCT GAGGTTCTTG GACTGCTTGC GCAAAAGGCC
GGATTGCAGG GTCTCGAAAG GATCTTTTTT TCCATTCTCT CCGCTCATTC GGTTTTCGTC
TATCGCAGGC TTGTTCAGTT TTTCAGTAAA AGGGGTTTTG ATTATCCCCT TGTTATCCGT
TTCAGGCAGA TGGATTCTGT TAAGCTTGAT TGTCTTATCA GTTGCGCAGT GCAAACCGGA
TCGCTTTTTT CGGATGGCAT CGGAGATGTT CTTGCTCTTC AAACAGGCCT CGATGTTGCC
GCTGAAATCA CTCTTGCATT CAATATACTT CAGGGCGCGC GTATCAGAAT GTCTAAAACC
GAATTCATAT CCTGTCCGGG ATGCGGCAGA ACCTATTTTG ATCTTGAAAA AGCAGCAGCA
TCGATCAAGC TGCGACTATC GCACCTCAAG GGATTGAAAG TTGGTATTAT GGGCTGCGTT
GTCAACGGAC CGGGAGAAAT GGCTGATGCC GATTTTGGTT ATGTTGGTTC CGGGAAAGGA
CGGATCAGTC TATATGTTGG CAAGGAGTGC GTTGAAGAGA ATCTCCCTGA AAGTGCCGCG
GTTGACCGTT TGGTCGGGCT TATCCAGGAA AAAGGCAAAT GGGTGAATCC CTGA
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| Protein sequence | MFQYRRRFTR EVPFGKIALG GYMPIRVESM TNTHTLDTVA TVKQCRRLYE AGCEIIRLTV
PTERDAENLR SIRDQLRSDG IDTPLVADIH FSSRAAFKAV EFVENIRINP GNYATKQKFS
AETYTDDEYQ EEIERVRKEF LPLVYKAREF GASMRIGTNH GSLSDRIVSR YGNSPEGMVE
AALEFARICE EEGYHDVLFS MKSSNVKVMI QAYRLLAVKA DAELRYAYPL HLGVTEAGDG
DEGRVKSAMG IGALLEDGLG DTIRVSLTED PVNEVPVGFA IVKKYNDLQL IRGENGHVPI
KQLIENQGSS FTNELPPFDP FSYQRRISRS FFVGGFAIGG DSMPRVETEA VIPLCRPEEL
FHEIMQRLLP EESIDAIRSE LVGVRVNTVE DLELLDELLS RLGEAKRFIT VSTKDIELFF
RLLDKVEKVR LDITEGEMLD RNIFDRLTND RLASVEFCFL HETSGAGVPA EVLGLLAQKA
GLQGLERIFF SILSAHSVFV YRRLVQFFSK RGFDYPLVIR FRQMDSVKLD CLISCAVQTG
SLFSDGIGDV LALQTGLDVA AEITLAFNIL QGARIRMSKT EFISCPGCGR TYFDLEKAAA
SIKLRLSHLK GLKVGIMGCV VNGPGEMADA DFGYVGSGKG RISLYVGKEC VEENLPESAA
VDRLVGLIQE KGKWVNP
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