| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpha266_0195 |
|---|
| Symbol | |
|---|
| ID | 4570576 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides DSM 266 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008639 |
|---|
| Strand | - |
|---|
| Start bp | 219381 |
|---|
| End bp | 221498 |
|---|
| Gene Length | 2118 bp |
|---|
| Protein Length | 705 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639764795 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_910686 |
|---|
| Protein GI | 119356042 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[S] Function unknown |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3347] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAACC TCTGGAATGA TGCCGAACTT CAGCGCTCCG TAAATGGGCA GCGCAGCGCC
AACGATATTC CTGTTGAACT TGCCGAGCTC GTGTACGCTT CACGTCTGCT CGGCAGCGAG
AGTACGCTGG TGATGCACGG CGGCGGCAAC ACCTCGGTCA AAAGCGAGCT GCACGATATC
ATCGGCTACA GGGTCAATGT CATTTTCATC AAGGGGAGCG GCGTCAATCT GGCGGGTGTG
GATGCGCACG ATTTTATGCC GGTACGGATC GAGCCGCTAC AGAAGCTGCA GCATCTCTAC
GCTACCGGCG GGCGCAGCAG CGAGGAGGAT ATACAGCAGT TCTCAACGCA ACGGTTCAAA
AACTTCCTCT ATCTGAACCT GTTCTACCTG ACCGAGCACA TGGTGAACCA TTCGCTTTCA
CCCTCGATCG AAACCCTGCT GCACGCGTTT CTGCCCCACC GGTTCATTTT CCATACGCAC
TCCACGGCGC TTTTGACGCT CAGCAACCAG CCTGACGGCC AGGATCTCTG CCGGGAGGTG
CTCGGAGAAT CGTTCGGCAT GGTGCCCTAT ATCAAGCCGG GTCTCGGGCT CGCCCGTTCG
GCCGCTACGG CCTACGAATC GGCTCCCTCC ATCAGGGGCC TTGTGCTGCA GAAGCACGGC
CTCGTCACCT TTGCCGATAC TCCGGATGAA GCGTACCATT GCATGATCGA AAGCGCAAAC
CTTCTGGAAG AGCGCATTAC CCGAGCCGGC CGGAAGGTGT TCCCTTCGGT TTCGCTTCCC
GCCGGGATCG CATCCCTCGA GGATACCGCG CCGGTTATCA GAGGGGCTGT CGTTGAAGAG
ATCATGCCCG GAAGCCGCGA TTACCGTCAG TTCGTGCTCG AATTCCGTAC TTCACCCGAT
ATTCTTGCCT ATGTCAACAG CGATTCTCTT TCCGATGTAA GCCAGAGGGG CGCCATGACC
CCGGATTTCA TTATCCGCAC CAAAAACCGG CCGCTGATCG TTCCGACTCC CGATGCCTCT
GACCTCGACG CGTTCAAAAC GGCGGTTCAT GAAGCGGTGG AGCGGTATGA CGCGGAGTAC
AGGGCTTATT TCCAGCGCCG GCGGCAGGCT GCGGGAATCG AGGTTTCCAT GCTCGATCCG
CTGCCCAGGG TGGTGCTTGT GCCCGGTCTC GGTCTGTTCG GTCTCGGCCG GACCGCCCGG
GAGGCTGCGG TCAACGCCGA TATCGCCGAA AGCACGGCAT CGGCCATTCT CGACGCGGAA
TCGGTTGGAC GCTTCGAGTC GATTACCGAA CAGGAGGTTT TCGATATCGA GTACTGGGAG
ATGGAGCAGG CCAAGATGAC GAAGGTCCGC CACGACGTGT TTGCCGGCAA GGTTGCCCTG
GTAACCGGTG CGGCAAGCGG CATCGGGCTG GCGACGGCAA GGGCGTTCCG TCAGCGCGGC
GCAGAGCTGG TCATTCTGGA CCTGAACCCT GAGGCGCTTC AGCAGGCGGC CGAAGAGCTC
GGCGGCGGAG TGCTTCCGAT TGCGTGCGAC GTTACCGACC GCGCTGCCGT CAGGCGGGCT
TTCGACAAGG TGTGCCGCCG TTACGGAGGG CTGGATATCT TGGTCTCGAA TGTAGGCGTC
GCCCTGCAGG GCCGCATAGG CGACGTTCCG GACGAGGTGC TTCGCCGGAG CTTCGAACTC
AACTTTTTTT CGCATCAGTC CATAGCCCAG GAGGCGGTCA GGATCATGCG ACTGCAGGGA
ACCGGGGGCG TCCTGCTCTT CAACGTTTCC AAGCAGGCGG TCAATCCGGG TCCCGATTTC
GGGCCGTACG GCCTGCCCAA GGCGGCGACC ATGTTTCTCG TGCGCCAGTA TGCGCTCGAT
CACGGACGCG ACGGCATCAG GGCAAACGGC ATCAATGCCG ACAGGATCCG CACCGGCCTT
CTGACCGACG AAATGATCAA AATCCGTTCG ACAGCACGGG GGCTGAACGA GCGGGAGTAT
ATGGCCGGCA ACCTCCTGCA GGTCGAGGTC ACGGCCGAGG ATGTCGCCGA GGCATTCGTG
CACCAGGCGC TCGAAACGAA GACGACCGGC TCGATCGTCA CGGTTGACGG CGGCAACATT
GCCGCCGCAC TGCGCTGA
|
|---|
| Protein sequence | MQNLWNDAEL QRSVNGQRSA NDIPVELAEL VYASRLLGSE STLVMHGGGN TSVKSELHDI
IGYRVNVIFI KGSGVNLAGV DAHDFMPVRI EPLQKLQHLY ATGGRSSEED IQQFSTQRFK
NFLYLNLFYL TEHMVNHSLS PSIETLLHAF LPHRFIFHTH STALLTLSNQ PDGQDLCREV
LGESFGMVPY IKPGLGLARS AATAYESAPS IRGLVLQKHG LVTFADTPDE AYHCMIESAN
LLEERITRAG RKVFPSVSLP AGIASLEDTA PVIRGAVVEE IMPGSRDYRQ FVLEFRTSPD
ILAYVNSDSL SDVSQRGAMT PDFIIRTKNR PLIVPTPDAS DLDAFKTAVH EAVERYDAEY
RAYFQRRRQA AGIEVSMLDP LPRVVLVPGL GLFGLGRTAR EAAVNADIAE STASAILDAE
SVGRFESITE QEVFDIEYWE MEQAKMTKVR HDVFAGKVAL VTGAASGIGL ATARAFRQRG
AELVILDLNP EALQQAAEEL GGGVLPIACD VTDRAAVRRA FDKVCRRYGG LDILVSNVGV
ALQGRIGDVP DEVLRRSFEL NFFSHQSIAQ EAVRIMRLQG TGGVLLFNVS KQAVNPGPDF
GPYGLPKAAT MFLVRQYALD HGRDGIRANG INADRIRTGL LTDEMIKIRS TARGLNEREY
MAGNLLQVEV TAEDVAEAFV HQALETKTTG SIVTVDGGNI AAALR
|
|---|
| |