| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_3622 |
|---|
| Symbol | trmE |
|---|
| ID | 4574422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | - |
|---|
| Start bp | 4003875 |
|---|
| End bp | 4005245 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639757681 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_903271 |
|---|
| Protein GI | 118582021 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACATGA GGGATACCAT AGCGGCAATC AGCACTCCCC CCGGCAATGG CGGTATCGGC
ATAATCCGGA TCAGCGGCGG GAGTGCATCC TGCATAGCTG AAACCCTCTT CAGACCGGTG
CGCAGCGGTG GCCTCATCAG CCACCGTTTT TATTATGGCA CGCTGATCGA CATTCAGACC
GGCGCGGTTG TGGACGAGGT TATGGCGGTC ATCATGCGCG CCCCCCACTC CTATACGCGG
GAGGATGTGC TGGAACTGCA CTGCCATGGC GGCATGCTGG TTGTTGAGCG GATTCTGTCG
CTGGTCCTCC GCGCAGGGGC GCGTCTGGCT GAACCGGGAG AGTTTACCCG CCGGGCTTTC
CTCAATGGCA GGATCGATCT CGTCCAGGCA GAGTCTGTCA TGGATATCAT CTCTGCCCAG
ACCGATGCCG CGCTTGCGCT GGCCCAACGC CAGCGGGGAG GCGTTCTCTC TTCGCGCATC
GCCGAGGCAC GTCAACTGCT GCTGCATGCG CTGGCACTGA TCGAGGCATA CATCGATTTT
CCCGAGGACG ATCTGGGTGA AACGGATGTC GAGAGCATCC GTTCATCCGT CGAGGGGGCA
CGGACCCACA TTCGGCGCCT GCTTGAGGAT TTCAACGAGG GGCGTCTCCT GCGCGAGGGA
ATATCGGTCC TGATCATCGG GAAACCGAAT GCCGGCAAGT CAAGCCTGCT CAACCGTCTG
CTCAACGAGA ATCGGGCCAT CGTTACCCAC CTTCCCGGCA CCACCCGCGA CATTATCGAG
GAGACGATCA ATCTTGGGGG ACTTGCGGTT CGTCTCCTGG ATACGGCGGG AATTCGCCAT
ACCGAGGATG TGATTGAGCA GGAGGGGATC AACCGTGCAC TGGAGAAAAT TCCCCAGGCC
GACCTGATCC TGTTCGTTCT GGACGGTTCG CGCCCCTTTG GCCCGGAAGA CCGGCTTATC
CTCGATGCCC TGCAGGGAAA CAGGTTTGTT GCGGCCATTA GCAAGGCCGA CCTTCCCCGC
GTTCTTGAAC TGCCGTCCGA GTGCTGCAAT TTGCCGCAGG TCTCTTTTTC CGCCGAGTCG
GGTGAAGGGG TCGATGATCT CAAGAGCACT GTCCGATCAT TGTTCGTCTC CAGTCAGGCC
ATCGATAACC GGGAGTATGT CGCCATTTCA CGGGTGCGGC ACCGCGATGC GCTGAGCTCC
GCGGATGGGT CTCTGTCCAG ATTCCGGCAG GGGCTTGATT CAGGAGCTTC TCTTGACCTT
CTGGCGCTGG ATCTTCGGGA GGCGCTGGCG TCAGTGGGTG AGGTGACGGG ACAGGTGACG
AACGAAGACG TTCTCGATCT GATCTTTTCT TCCTTCTGTA TCGGCAAGTA G
|
|---|
| Protein sequence | MYMRDTIAAI STPPGNGGIG IIRISGGSAS CIAETLFRPV RSGGLISHRF YYGTLIDIQT
GAVVDEVMAV IMRAPHSYTR EDVLELHCHG GMLVVERILS LVLRAGARLA EPGEFTRRAF
LNGRIDLVQA ESVMDIISAQ TDAALALAQR QRGGVLSSRI AEARQLLLHA LALIEAYIDF
PEDDLGETDV ESIRSSVEGA RTHIRRLLED FNEGRLLREG ISVLIIGKPN AGKSSLLNRL
LNENRAIVTH LPGTTRDIIE ETINLGGLAV RLLDTAGIRH TEDVIEQEGI NRALEKIPQA
DLILFVLDGS RPFGPEDRLI LDALQGNRFV AAISKADLPR VLELPSECCN LPQVSFSAES
GEGVDDLKST VRSLFVSSQA IDNREYVAIS RVRHRDALSS ADGSLSRFRQ GLDSGASLDL
LALDLREALA SVGEVTGQVT NEDVLDLIFS SFCIGK
|
|---|
| |