| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_3494 |
|---|
| Symbol | |
|---|
| ID | 4572661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | + |
|---|
| Start bp | 3859698 |
|---|
| End bp | 3861887 |
|---|
| Gene Length | 2190 bp |
|---|
| Protein Length | 729 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639757553 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_903144 |
|---|
| Protein GI | 118581894 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAATACCG GCCACATTTC CATACAGCAG TTTACCCAGG CCATGGCCTG GACTCTCTCG
GCGATGATCA CACTCCTGGC GCCGGCCACC TTTTTCCTGG TCTCCTGCGA GCACCTGCGA
AGCGAACTCC ACGTCCAGAC CGAATTGAGC GCTAACGACC TGAGTGCTAT GATCAGCTCC
AATACGCAGT TGTGGAGGTA TGAGGAGCTC AGGCTTTCGG AACTGCTACG GCGGCGGTCG
AACAGTGTTG TTGCCGAGAG CAGAATCCTC TACGACATCG GCGGCGAAGT CATCGCCAGA
AATCGGCAAC AGGTGTCCAT TCCCCGTATC ACGGACGTGC ATGACATCTT TGATGCCGGA
ACTGCTGTTG CCCGCATCGA GGCTTCCCGT TCCCTAACCC CCCTGCTGCT CAGAACGTTC
GCCGTGGCGC TCTGTTCGGC GATAATCGCC GCAGTAGTGT TTTACATGCT GCGTACGCTT
CCCCTGCGCG CCACATCCAG GGCCTATCAG GCCTTGGACG AAAGTGAGAG CAAATACCGT
CTGCTGTACG AAAGCATGCG GGAGGGGATG GCGCTGCACC ACATGGATTT CGACGAAAAC
GGTGATTTTG CTGCCATCTC GGTTATCGAC GCGAATCCGA GCTGCGCGGC CATGTTCGGC
TGTGATCCGC AGACGCTCAT CGGCAGCGAC AGTATCGCGC TGTTTGGGGA AACCTTCCGG
GAGTACCTCT CGGAGTTGCT GCGACTGCTG GAACAGGGCA CCAGCATCCA GTTCGAGCTG
ACCCTGCCGC GCACGGACAA CCTTTACAGC GTACACGCCT TTTCTCCCGA CCACGGCTTG
GTCGCCACAC TGTTCGAGGA TATTACCGAG CGCAGGAAAT CCGAGCAGCA GATCCAGCAC
ATGGCCTACT TCGACAGCCT CACCGATCTT CCCAACCGGG TCCTGTTTCT TGACCGCCTC
CGGCAGGCCA TAGCCCATGC ACTTCGGGAT GAGAATTCCC TGGCGGTGCT GTTCCTCGAC
CTGGACCGGT TCAAGGATAT CAACGACACC CTGGGACATT CGGCAGGGGA CCAGCTGCTG
ATCCAGGTCA CCCGGCGCCT GGGGCGGCAG ATCCGTTCCT GTGACACCCT GGCCCGCCTG
GGAGGGGACG AGTTCGTGGT CATCGTCACC GATCTGGGTA AAAAAATGAA CGCCACCCGG
GTTGCCCAGG ACCTTATCAA TGCGATCCAG CCCCCCTTCC TGATCGCCGG ACGCGAGCTG
CACGTGACCA CCAGCATCGG TATCGCGCTC TTCCCCGACG ATGGCAATAA CGCGGAAACG
CTCGTCAAGC ACGCCGATCT GGCAATGTAT TCATCCAAGG AGTCGGGGCG CAACAGGTAC
AACTTCTACT CCGCCTCCAT GAACCAGAAG GCGCTCATGC GCATGGAGAC CGAGGCCGGC
CTGCGCAACG CGCTGGAACG GAGAGAATTT TATGTGGAAT TTCAGCCCAT CATGAATGCA
GCTGACTCTA CCGTTGTGGC TGCCGAAGCA CTCGTGCGCT GGAACCACCC CACCCGCGGC
AGGATTCCGC CAGACCAGTT CATCGACCTG GCCGAAGAAA CCGGTCTGGT CGTTCCCCTG
GGGGAATGGG TGCTGCGCAC CGTCTGCTCG AGGATAAAAA CGTGGAGCGA TGCCGGACTC
CCGCTGATCA GGTTTTCGGT CAATGTCTCC AGCAGGCAGA TCGAGCGGCA GGACTTCGCG
GAAATCGTCA GGAACGCGCT GCGCGAATCG GGCGCCAACA GCGCCCAACT GGAGATCGAA
CTTACCGAGA GCTGCCTGAT CCGACACTCG GACACGAACA TCAGCGATCT CTTCGGACTG
AAGGAGTGGG GCGTTTCCTT CGCCATCGAC GACTTCGGCA CCGGCTATTC ATCCCTGGGA
TATATCAAGA CCCTGCCCAT CGACCATATC AAAATCGACC GGTCGTTTGT CAGGGACATC
AGCACGGACT TCCACGACCA GGCCATTGTG GAGGCGATCA TCGCCATGTC GCAAAGGCTG
GGCATCCGCA ATATCGCCGA GGGGGTGGAG ACCATCGAAC AGGTCCGTTT CCTTCAGGAG
CGTGGCTGCG AAGAGATCCA GGGGTACTAC TTCCACCGCC CCCTGTCGGC TGAGGCGCTG
GAGGAACTGC TCAGAGCCCA AGAAAACTAG
|
|---|
| Protein sequence | MNTGHISIQQ FTQAMAWTLS AMITLLAPAT FFLVSCEHLR SELHVQTELS ANDLSAMISS
NTQLWRYEEL RLSELLRRRS NSVVAESRIL YDIGGEVIAR NRQQVSIPRI TDVHDIFDAG
TAVARIEASR SLTPLLLRTF AVALCSAIIA AVVFYMLRTL PLRATSRAYQ ALDESESKYR
LLYESMREGM ALHHMDFDEN GDFAAISVID ANPSCAAMFG CDPQTLIGSD SIALFGETFR
EYLSELLRLL EQGTSIQFEL TLPRTDNLYS VHAFSPDHGL VATLFEDITE RRKSEQQIQH
MAYFDSLTDL PNRVLFLDRL RQAIAHALRD ENSLAVLFLD LDRFKDINDT LGHSAGDQLL
IQVTRRLGRQ IRSCDTLARL GGDEFVVIVT DLGKKMNATR VAQDLINAIQ PPFLIAGREL
HVTTSIGIAL FPDDGNNAET LVKHADLAMY SSKESGRNRY NFYSASMNQK ALMRMETEAG
LRNALERREF YVEFQPIMNA ADSTVVAAEA LVRWNHPTRG RIPPDQFIDL AEETGLVVPL
GEWVLRTVCS RIKTWSDAGL PLIRFSVNVS SRQIERQDFA EIVRNALRES GANSAQLEIE
LTESCLIRHS DTNISDLFGL KEWGVSFAID DFGTGYSSLG YIKTLPIDHI KIDRSFVRDI
STDFHDQAIV EAIIAMSQRL GIRNIAEGVE TIEQVRFLQE RGCEEIQGYY FHRPLSAEAL
EELLRAQEN
|
|---|
| |