| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_3323 |
|---|
| Symbol | |
|---|
| ID | 4572197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | - |
|---|
| Start bp | 3660616 |
|---|
| End bp | 3661923 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639757382 |
|---|
| Product | WD40 domain-containing protein |
|---|
| Protein accession | YP_902973 |
|---|
| Protein GI | 118581723 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000401957 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTCG ATACAATCAC CATGATGAGA ACCCTTCTGA TCCTTCTCGT GCTGTTCCTG
ATGCTGCCGG CCGTGTCATG GTCAGAGAAC GGCTATATCG AGATAACCGC GCCGGGCAAT
CGCCAACTCA GGATGGCCGT GGATGTTCCC CGCAGTCTGG AAGCGGCCTC GTCGCCCGAA
AAGGCCCGGG AGATGGGGGA GGTGATCGCC TTCGACATGA ACATGTCGGG CCTCTGTCTG
GCTGAAATCA AGGAACAGTT TAACCTCTCG GGCGCTCTGC TCTTTGCCGA GGCCGACTTC
AACTCCTGGC TGAAGGGGGG CTATGACCTG CTGGTGCGGG GCGAATACAG CGTAAAGGGA
GACGATCTGA CGGTCGAGTT CCGGCTCTTC GACCTGGCCA ACCGCAAGAT GATGACCGCC
CGACGCTATC TGGGAAAGAC AAAGGACCTG CGCAGGTTCG CCCACTCCTT TGCCGACGAG
ATCCTGCTGG CCATGACTGG TGAACGGGGC TGCTTTACCA CCCATATTGC ATTTGTCAGC
ACCAGATCCG GCAACAAGGA GATCGCCATC ATGGACTGGG ACGGTCACGA CACCCGGCAG
CTGACCAGAA ACCACTCCAT CAACCTCAAC CCCGACTTCT CGCCCAACGG CCGCGAGATC
ATCTTCACCT CCTATAAGCG GCACAACCCG GATCTTTACC GGCGTCCCCT TTCCAGTCCG
GTGGAGGTGG CGGTCTCCCA TCGCGAAGGT CTGAATATCA CCGGCGCCTG GTCGCCCGAT
GGATCGCGAA TCGCCCTGGC TCTGAGCAAG GACGGAAATT CCGAAATCTA TACCATTGCC
CGGGACGGTT CCAGCCCGGT TCGCCTGACC TCTCACCCGG CCATAGAAAT TTCCCCCACC
TGGTCGCCCA ATGGCTCCCA GATCGCCTTC GTCTCCGACC GCCTGGGGAA ACCGCAGATT
TTCATCATGA ATGCCGATGG AACCGGCGTT CGGCGCCTTA CCACCAACGG CGGCTACAAC
GTCAATCCGC GCTGGTCGCC AAAGGGGGAC AAAATCGCCT ATGCTCGCAT GGAGGGCGGT
GGATTCCAGA TCCATACCAT CAATGTCAAT GGTAGCGACG ACACCCAGTT GACCAGCAGC
GGCAGCAGCG AAAACCCGGC CTGGTCGCCC GATGGCCGCC TGATAGCGTT CAGCGGTAGG
AGGGGAAGTG GAGACGAAAT CTACGTCATG CGGGCCGACG GCTCGGGAGA GACCCGCGTC
AGCAAGGTCG GGGGGCGCAG TACCCAGCCG GCCTGGCAGC CGCGCTGA
|
|---|
| Protein sequence | MKVDTITMMR TLLILLVLFL MLPAVSWSEN GYIEITAPGN RQLRMAVDVP RSLEAASSPE
KAREMGEVIA FDMNMSGLCL AEIKEQFNLS GALLFAEADF NSWLKGGYDL LVRGEYSVKG
DDLTVEFRLF DLANRKMMTA RRYLGKTKDL RRFAHSFADE ILLAMTGERG CFTTHIAFVS
TRSGNKEIAI MDWDGHDTRQ LTRNHSINLN PDFSPNGREI IFTSYKRHNP DLYRRPLSSP
VEVAVSHREG LNITGAWSPD GSRIALALSK DGNSEIYTIA RDGSSPVRLT SHPAIEISPT
WSPNGSQIAF VSDRLGKPQI FIMNADGTGV RRLTTNGGYN VNPRWSPKGD KIAYARMEGG
GFQIHTINVN GSDDTQLTSS GSSENPAWSP DGRLIAFSGR RGSGDEIYVM RADGSGETRV
SKVGGRSTQP AWQPR
|
|---|
| |