| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_3100 |
|---|
| Symbol | |
|---|
| ID | 4573651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | + |
|---|
| Start bp | 3388234 |
|---|
| End bp | 3389898 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639757158 |
|---|
| Product | 2-nitropropane dioxygenase, NPD |
|---|
| Protein accession | YP_902751 |
|---|
| Protein GI | 118581501 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | [TIGR02814] PfaD family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTATC AGTCACCGGG TACCACCACA ATGGAACACC CCCTTCTGGG GTGGTGTCGG
CCAGACGCCG CCCCCTGCTC CGGAACAGAC CTGGCCGATG GCCTTCGCCG CCTTCACCGG
CCGCTCTTCA TCGCCGCCCA GGACGATTCC CTGACCCCCC TCTCCAGGCC ACGGCTGCTG
GCGGACAGTG AGCCACCACC GAGCGGCGCC CTGCCGCTGG TCGGCTTCTC CCCCCCATGT
CCCCCTGAAA ACCTGGGCGA TCCCTCCTTC TGCGGGGAAC TGGGAATCCG CTACCCCTAC
CTAGGCGGTT CCATGGCCAA GGGGATCAGT TCGGTGGCCA TGGCGCTGGC CCTGGGCAGG
GCAGGCATGC TCGGCTTCTT CGGCGCCGCG GGCCTGACCA TCTCCCAGGT GGAAGAGGCC
GTCAACCAGC TCACGTCCAG CAAGGTTCCC TTCGGCTGCA ACCTGATCCA TTCGCCCCAC
GACCCGGAAC TGGAGCAGAC CCTGGTTCAG CTCTACCTGG AGCGGAACGT GCGGCTGATG
GAGGCATCGG CCTTCATGAA GCTGACCCTG CCGCTGGTGC GCTACCGCCT GGCCGGCATC
CGCCGTAATG ACGACGGCAG CATCCACACC CCCAACCGGA TCATCGCCAA GGTCTCCCGA
GAGGAGTTGG CGGCACGGTT CTTCGCCCCG CCACCCGAGG CGTTTCTTCA CGAGCTGGTG
GCGGACAAAG AGATCACCCA CGAACAGGCG GAACTGGCTG CCCATATCCC CATGGCCCAG
GAGATCACCG CCGAGGCCGA TTCCGGCGGG CACACCGACA ACCGGCCAGC CAACGCCCTC
TTCCCCACCA TCGCATCCCT GGCGGCCCGC ATGCAGGCCG AGCACAACTA TGACCTGAGG
CTGCGCGTCG GCCTGGGGGG AGGCATCTCC ACACCTGCCG CGGCTGCGGC GGCCTTTGTC
ATGGGCGCGG CCTACGTCAT GACCGGCTCG GTCAACCAGG CATGCCGGGA GTCGGGAACC
TCGGACGAGG TGCGCGCCAT GCTGGCCGAA ACCCGCCAGG CAGACGTGAC CATGGCCCCC
TCGGCCGACA TGTTCGAGAT GGGGGTCAAC GTGCAGGTAC TCAAGCGCGG CACCATGTTC
CCCATGCGCG CCCAGAAGCT GTACGAGATC TACCGCGCCT GGCCGAGCCT GGAGCAGATC
CCGACTCTCG AGCGTGAAAA GCTGGAAAAG ACCATCTTCC AGGCGCCGCT GGAGCAGATC
TGGAAGATCA CCCGCGACTA CTTTCTTAAG CGCGCGCCGC AGCAGGTCAG CCGCGCCGAG
CAGGACCCCA AACACCGCAT GGCACTGGTC TTCCGCTGGT ACCTGGGACA GGCGGCCCAC
TGGGCCAAGG ATGGCGACAG ATCGCGCAGG ATCGACTACC AGATCTGGTG CGGCCCGGCC
ATGGGCGCCT TCAACGAATG GGTCGCCGAC TCCTTCCTGG AGCCCCCGGC CAACCGCGAC
GTGGTAACGG TCGGCCTGAA CATCCTCTTC GGCGCAGCGC TCATGACCCG CGCCAGCGTA
CTGCGCTGCC AGGGGCTCCC CATCCCCCGG GAAGCCCTGA CCACGAAACC GCTCGAACTC
GCACATATCA AGGAGTATCT ATCAGGTGAA AACGCTCGAT CCTAA
|
|---|
| Protein sequence | MSYQSPGTTT MEHPLLGWCR PDAAPCSGTD LADGLRRLHR PLFIAAQDDS LTPLSRPRLL
ADSEPPPSGA LPLVGFSPPC PPENLGDPSF CGELGIRYPY LGGSMAKGIS SVAMALALGR
AGMLGFFGAA GLTISQVEEA VNQLTSSKVP FGCNLIHSPH DPELEQTLVQ LYLERNVRLM
EASAFMKLTL PLVRYRLAGI RRNDDGSIHT PNRIIAKVSR EELAARFFAP PPEAFLHELV
ADKEITHEQA ELAAHIPMAQ EITAEADSGG HTDNRPANAL FPTIASLAAR MQAEHNYDLR
LRVGLGGGIS TPAAAAAAFV MGAAYVMTGS VNQACRESGT SDEVRAMLAE TRQADVTMAP
SADMFEMGVN VQVLKRGTMF PMRAQKLYEI YRAWPSLEQI PTLEREKLEK TIFQAPLEQI
WKITRDYFLK RAPQQVSRAE QDPKHRMALV FRWYLGQAAH WAKDGDRSRR IDYQIWCGPA
MGAFNEWVAD SFLEPPANRD VVTVGLNILF GAALMTRASV LRCQGLPIPR EALTTKPLEL
AHIKEYLSGE NARS
|
|---|
| |