| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_3049 |
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| Symbol | |
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| ID | 4574176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter propionicus DSM 2379 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008609 |
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| Strand | - |
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| Start bp | 3336693 |
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| End bp | 3338441 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639757106 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_902702 |
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| Protein GI | 118581452 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000323778 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTAAAA AAAATATGGA CGGCGTTAAG CAGTTGATTG ATCTCGGCAA GGAAAAGGGT
TTCCTGACCT TCGAAGAGGT TAACGACATC CTGCCGCCAG ATATTGCCAC GGAACAGATA
GATGACGTCA TGGGCATGTT TGGCGATCTG GATATCGAGA TCGTTGACTC TGCCCAGAAA
GTCAAGATTC CGAAAATGAA GCTTGAGATG GAAGAAGAAG AGGAAGCGGA AGGTGAGGCC
GAAGAGGTCG AGTTTGAGCC TGGCTCCATC GGGCGTACAA GCGATCCGGT GCGCATGTAT
TTGCGTGAAA TGGGCTCTGT TTCCCTTTTG ACCCGCGAAG GCGAAGTTGA GATTGCCAAG
CGTATTGAGG ATGGAGAGCG TGATGTTGCC AGCGTTATTC TTAATACGCC GATTACCATA
AAAGAGGTGC TGCAACTGGG AGATAAGCTT CGCAAATTCC AGCTGAATGC TTCTGAAATC
AGCAAAGAGG TTGAGGAAGA GTCTCTGGAT GATGAGGAAG AAGATCTTCC CAAGCTGCGC
ATCCTTGAGA TTATCGATGC AATTTCAAGT GGTGATGAGG AATTGACTGG CCTTTCTGAA
GAGCTTGAAA AATGTGCTGC CGCCGCCAAA AAGAAGGAAC TTGAGAAAAA AATTCAGGAA
CTCAGGGAGT CGCAGGCAAA ACTGCTGATC TCGCTGCGCC TGAAGGATCG CCACATAAAT
AAAATATCAG AACGCCTGAA GGAGTTGTCG TTTAAGGTCG ACAGGCTCAT GAAGGAATTG
GCTGATCTGG AGGATCTGAT ACCAGCTGAG AAACTCAGAT TTTTCATGGA CAGTTACCAT
AAGGATGAAG AAAAAGCTCA GGCCGAGTTG CGTAAGCTCA AACTGGGCGC AGAAGAACAG
GATAGAGTTG ATGCCCGATT GCTTTCCACA GCGCGAAAGC TGAAGAAAAT CGAACTGGAA
TCCGGTTTCA AGGCCAGCGA ACTGTCAGCG GCGCTTCAGG CGATTGAAGA AGGTGAGTGT
AAAGCGCGTA TAGCGAAATC CGAACTTATC GAAGCGAATC TTCGCCTGGT TGTATCCATT
GCGAAAAAGT ACACCAATCG AGGCTTGCAG TTTCTTGACC TGATCCAAGA GGGCAACATC
GGCCTTATGA AGGCGGTGGA CAAGTTCGAA TACCAGCGTG GTTACAAATT TTCTACTTAT
GCCACCTGGT GGATACGTCA GGCAATTACC CGTGCAATTG CCGATCAGGC ACGAACCATA
CGGATTCCAG TGCACATGAT CGAGACCATC AACAAGCTCA TCCGCACCAG TCGCCAGTTG
GTACAGGAAA ATGGTCGTGA GCCGGCTCCT GAAGAAATTG CGGAACGGAT GCAATTGCCT
CTGGATAAGG TTCGTAAAGT TTTGAAGATT GCCAAGGAGC CTATTTCGCT GGAGACTCCG
ATTGGCGAGG AAGAAGACTC GCATTTGGGC GATTTTATTG AGGATAAAGC GGTGATTTCT
CCCATAGAAG CGGTCATTAA GGCCAATCTG TCGGAGCAGA CATCCAGGGT ATTATCCACT
CTTACTCCTC GCGAGGAGAA GGTCCTGCGT ATGCGTTTCG GTATCGGCGA AAAGAGTGAC
CACACTCTCG AGGAGGTTGG GCAGGACTTC GCCGTTACCC GTGAGCGGAT TCGCCAGATA
GAGGCAAAGG CGCTGCGCAA ACTGCGGCAT CCCAGTCGCA GTAAAAAGCT CAAGAGCTTT
GTTGAATAA
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| Protein sequence | MVKKNMDGVK QLIDLGKEKG FLTFEEVNDI LPPDIATEQI DDVMGMFGDL DIEIVDSAQK
VKIPKMKLEM EEEEEAEGEA EEVEFEPGSI GRTSDPVRMY LREMGSVSLL TREGEVEIAK
RIEDGERDVA SVILNTPITI KEVLQLGDKL RKFQLNASEI SKEVEEESLD DEEEDLPKLR
ILEIIDAISS GDEELTGLSE ELEKCAAAAK KKELEKKIQE LRESQAKLLI SLRLKDRHIN
KISERLKELS FKVDRLMKEL ADLEDLIPAE KLRFFMDSYH KDEEKAQAEL RKLKLGAEEQ
DRVDARLLST ARKLKKIELE SGFKASELSA ALQAIEEGEC KARIAKSELI EANLRLVVSI
AKKYTNRGLQ FLDLIQEGNI GLMKAVDKFE YQRGYKFSTY ATWWIRQAIT RAIADQARTI
RIPVHMIETI NKLIRTSRQL VQENGREPAP EEIAERMQLP LDKVRKVLKI AKEPISLETP
IGEEEDSHLG DFIEDKAVIS PIEAVIKANL SEQTSRVLST LTPREEKVLR MRFGIGEKSD
HTLEEVGQDF AVTRERIRQI EAKALRKLRH PSRSKKLKSF VE
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