| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_2905 |
|---|
| Symbol | |
|---|
| ID | 4574785 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | + |
|---|
| Start bp | 3178134 |
|---|
| End bp | 3179672 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639756957 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_902560 |
|---|
| Protein GI | 118581310 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01188] daunorubicin resistance ABC transporter ATP-binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.725658 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCGTCA TCGCCCACAA CCTGACCAGG CGCTTCGGCG ACCTGACCGC CGTCGACTCC
CTCTCCCTCT CCATCTCCGA AGGAGAGCTG TTCGGGCTGG TCGGCTCGGA CGGGGCGGGC
AAGACCACCA TCCTGCGCAT GCTGACCGGC GTCATGGACC CCAGCAGCGG CGAGGCGCGC
ATCCTGGGGC ATCCCAGCGT CAATCTGGCG CCGGTGCGGG GGGATATCGG CTACATGAGC
CAGCGCTTCG GGCTCTACCC CGATCTGACC GTGGGGGAGA ACATCCGCTT CTATGCCGAC
CTGTTCGGAG TAGCGGACGC CGAGCGCAGG AGGCGCACGG AAGAGCTGCT CTCCTTCAGC
GCCATGGCCC CCTTTGTGGG GCGGCAGGCA GGCAGGCTCT CCGGCGGCAT GAAGCAGAAA
CTGGGGCTCT GCTGCGCCCT GATCCACCAG CCCAGGGTGC TCTTCCTAGA TGAGCCGACC
AACGGGGTCG ACCCCCTCTC CCGACGCGAT TTCTGGCGCA TCCTGCGTGA CCTGCGCGCA
GCGGGGGTCA CCATCCTGGT GGCCACCGCC TATCTGGACG AGGCCGAGCG CTGCGACCGG
GTCGGACTGC TGCACCAGGG GAGGCTCTTG GCCTGCGACA CCCCGGAAAA GCTGACCAAC
GGCTGGTCGT CCTCCCTGGA AGAGCTGGTC ATCTCCAGCA TCGACGACCA TGCTCCCCCG
GCATCGAAAC CAGGCCATAG AGGCTCAGTG CGCCGGCAGC CGCCCCCCTC CCCTGCTGCA
GAGGGGCACA ACCGGCTCCC CTCCGTCACC CTCAACGGCC TGACGAAACG GTTCGGCGAA
TTCGTCGCCG TGGACGACAT CAGCCTGAGC GTTCCCGCCG GGCAGATCTT CGGCTTCCTG
GGCCCCAACG GAGCGGGCAA ATCCACCACC ATCCGCATGC TGTGCGGCAT CCTCTCCCCC
AGCTCGGGCC GGGGACGTGT GGCCGGTTTC GACATCGCCA CCGAGCCGGA GCGGATCAAG
GAAAACATCG GCTACATGAG CCAACGCTTC TCGCTGTACG AGGAACTGAC CGTCGAAGAG
AACATCGCCT TCTACGCCGG CGTCTACCGC CTAGCGGCGG ACAAGCGCAG GGAACGCAGC
GAATGGGTGA TCGAGATGGC CGGCCTCTCC GAACGGCGCG GCTCACGGGC GGGCGAGCTC
TCCGGCGGCT GGCGGCAGCG GCTGGCCCTG GGGTGCGCCA TACTGCACGA GCCGCCCATC
GTCTTTCTGG ACGAGCCCAC TTCGGGGGTC GATCCCTTAA GCCGCCGAAA GTTCTGGGAA
CTGATCTACT CCCTGGCAAG GGGAGGGGTC ACGGTCTTCG TCACCACCCA CTACATGGAC
GAGGCCGAAT ACTGCGACCG CCTGGCCCTG ATCTACCGCG GCAGGCTGGT GGCCATCGGC
ACGCCTGATG AGATGAAGCG GGAGAGGGCA ACGGCCGGAG GCAAAGTGCC GAGCCTGGAA
GATGTGTTCA TCGGGCTGAT CGAGGAGCAG GACAGCTGA
|
|---|
| Protein sequence | MTVIAHNLTR RFGDLTAVDS LSLSISEGEL FGLVGSDGAG KTTILRMLTG VMDPSSGEAR
ILGHPSVNLA PVRGDIGYMS QRFGLYPDLT VGENIRFYAD LFGVADAERR RRTEELLSFS
AMAPFVGRQA GRLSGGMKQK LGLCCALIHQ PRVLFLDEPT NGVDPLSRRD FWRILRDLRA
AGVTILVATA YLDEAERCDR VGLLHQGRLL ACDTPEKLTN GWSSSLEELV ISSIDDHAPP
ASKPGHRGSV RRQPPPSPAA EGHNRLPSVT LNGLTKRFGE FVAVDDISLS VPAGQIFGFL
GPNGAGKSTT IRMLCGILSP SSGRGRVAGF DIATEPERIK ENIGYMSQRF SLYEELTVEE
NIAFYAGVYR LAADKRRERS EWVIEMAGLS ERRGSRAGEL SGGWRQRLAL GCAILHEPPI
VFLDEPTSGV DPLSRRKFWE LIYSLARGGV TVFVTTHYMD EAEYCDRLAL IYRGRLVAIG
TPDEMKRERA TAGGKVPSLE DVFIGLIEEQ DS
|
|---|
| |