| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_2656 |
|---|
| Symbol | |
|---|
| ID | 4574200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | - |
|---|
| Start bp | 2890021 |
|---|
| End bp | 2891727 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639756711 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_902317 |
|---|
| Protein GI | 118581067 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000162187 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATACG TCCTGAGCAT GCTTTTCTGC GCCACAATGC TTTCCTCATG CGCCACCTTT
GGTGAATATG CGCCTTCTAC TCCCTCCCTG TCATCTCCTG CTTATGACGC CTACTCCCGA
GCCCTGTATC TCTACTCGCG CTCCAGGCTG GCAAGCCTGG AGGGGGAGTA TGCCCTTGCC
CTGAACTGCC TGCGGGAGGC AATCGAACAG GACCCTTCTT CCGCTTTTCT GTATTCAGCG
ATGGCCGAGA ACAAACTTAA GATCGGCCAG GTTCAGGAAG CTTTGGAGAA TATCAACAGG
GCCATCAAAC AGGACCCGTC CTTTCGTGAG CCATATGTCA TGGCCGGCGT TTTGATGGCC
TCTGCAGGCA AGGATACCGA GGCGGTCGGT TATCTCCGTA CGGCAATCCA GTTGGACCCG
TCCAAGGAGG ACGCCTATCT TCATCTGGCG GTCTCGTTGA CAAGGATGTT TGAATATGAA
GAGGCGGTAA CTACCCTCAA GTCGCTTGTG AAACAGAACC CCGAATCGGT GTTGGGATAC
TACTATCTCG GCCGTTCCTA TAGCCAGATG AAACTCTATC GCGATGCCGT TGGCTATTTC
AAGAAGAGTA TTGAGCTTCG CCCTGAATTC AGCCAGGCTG CCATCGACAT GGCTGCCTCG
TACGAGGCGC TCGGTGACTA TACCAAGGCC ATTGAAATCT ATCACGATCT TCTGGATGAA
GACGAGAGTC GTACCGCAGT TCAGCAGCGC CTGATTCAGC TTTTGATCCA GCAGCGCAGG
TTTCAGGAGG CTCTTGAGTA TTTGAACCAG TCCGCTGGGT CCGGTTTGAG CAGTGCCGAA
ACCATGAGAA AAATCGGCTT AATCCACCTT GAACTGGAAC AATATGACGA GGCCATTGCC
GTTTTTAACG ATCTGCTGGA AAAAGATCCC TCTGCCCATC ATGTCAGGCT CTACCTGGGG
GTGGCATATG AGGAAAAGGG GGATCTGGAT CGCGCCAAGG CAGAATTTTT GAAAATTCCC
TCTGATTCCA GTGTATATAC CGACGCCGTA GGCCATATTG CCTTTATCTT TTCGGAAAGA
GGCCAAAACG ATGCCGCCGT GGATATCCTG AAAAATTCGA TTGCGCACAA TCCCGCGCAG
ATTGAGCCAT ATCTCAATCT GTCTACCATT TATGAGAAAC TCGATAAATC CGAAACCGCT
TTAAGCTTGC TCCTTGATTG CGAAAAACGC TTTGAGAATG AACCGCGCCT ACACTTTCGA
ATCGGTGTGT TATATGACAC GTTGGGCAAA AAACGGGATT CAATTGAACG CATGAAAAAG
GTGCTCAGCA TCAACCCAAG GGATGCACAG GCTCTCAATT ATCTGGGTTA TACTTATGCT
GAAATGGGAG TGAATCTTGA TGAGGCACTG GGATTCCTCA AACAGGCGGT TGAGATCCGT
CCAAACGATG GCTTCATTCT GGATAGCCTC GGCTGGATAT ACTATAAAAT GAAGAAATAT
GATGAGGCTG TCAGATGGCT TGAGAAAGCC AGTCGTCTTG CTGATGATGA TTCAACCATT
ATTGAACACC TCGGTGATGC TTATCTGGCC CAGCGCGATT TTAAGAAGGC CTTAAATGCA
TATAAGCGGG CGCAGGAGCT TGATCCGAGC CGCAAGGAGC TGACCGAAAA GATTCGCAAG
CTCAAAGGGG AGCTGGGTGA ACGATGA
|
|---|
| Protein sequence | MKYVLSMLFC ATMLSSCATF GEYAPSTPSL SSPAYDAYSR ALYLYSRSRL ASLEGEYALA
LNCLREAIEQ DPSSAFLYSA MAENKLKIGQ VQEALENINR AIKQDPSFRE PYVMAGVLMA
SAGKDTEAVG YLRTAIQLDP SKEDAYLHLA VSLTRMFEYE EAVTTLKSLV KQNPESVLGY
YYLGRSYSQM KLYRDAVGYF KKSIELRPEF SQAAIDMAAS YEALGDYTKA IEIYHDLLDE
DESRTAVQQR LIQLLIQQRR FQEALEYLNQ SAGSGLSSAE TMRKIGLIHL ELEQYDEAIA
VFNDLLEKDP SAHHVRLYLG VAYEEKGDLD RAKAEFLKIP SDSSVYTDAV GHIAFIFSER
GQNDAAVDIL KNSIAHNPAQ IEPYLNLSTI YEKLDKSETA LSLLLDCEKR FENEPRLHFR
IGVLYDTLGK KRDSIERMKK VLSINPRDAQ ALNYLGYTYA EMGVNLDEAL GFLKQAVEIR
PNDGFILDSL GWIYYKMKKY DEAVRWLEKA SRLADDDSTI IEHLGDAYLA QRDFKKALNA
YKRAQELDPS RKELTEKIRK LKGELGER
|
|---|
| |