| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_2478 |
|---|
| Symbol | |
|---|
| ID | 4574000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | - |
|---|
| Start bp | 2681105 |
|---|
| End bp | 2683759 |
|---|
| Gene Length | 2655 bp |
|---|
| Protein Length | 884 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639756528 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_902141 |
|---|
| Protein GI | 118580891 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.599046 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTGA AACTGATAGC TGCGTTGTTG ATTGTCCTGA CGGTCTGCTC CGCGTGCGGT
CGCAAGTCAA AGGAAGAGTT GCTGGCTGAA GGCATCAAAC AGTTGGGTGC ATCGAACCCC
AGCGGTGCCG TCGTGCTTTT CAAGAATGCC CTTGAAAAGG ATGAGAACTA CCTGGATGCC
CGTTTCCAGT TGGCCAAGGC CTATGCCCGC CTGGGCAAGA ACGAGCAGGC GGAGAGGGAG
TTCCTGAAGG TTCTCAAGCA GAACCCGTCC CGTGACGAGG CGATCGTCGA GCTTGCCGCT
GTCTACAATG CCACCCGCAA GGGAGATCAG GCCTTTGCCC TGGGGGAGCA GTACCTTGCC
AAACACCCCG GTTCTGCGGA AGGGTTGGAG ATCCTGGGCA TCGCCTGCGC GGTGACCAAG
CGCTTTGACG ATGCTGAACG TTATCTGCAG CAGGCCCTCG CCGCTTCCCC CTCCCGTTCG
AAAACACGGC TTGAGCTTGC CGGCGTGTAT GTGGCGGCCG GCAAGGAGCA GCAGGCAAAG
GCTGTTCTGG AAGAACTGGT CCGAAGCGAC CCGAAAAACT TCAAGGGCTT TTACATGCTG
GCCGCCATAG AAAAATCGGG CGGCAATCGG GACCGGGCCC TGGAGATCTA CACCAGGATA
CTCTCCATGG ACAGGTCGGA GACCCTTGCG GCATACAAGT CAGGCCTGAT TCAGATTGAG
AAGGGTGATC TGCCGAAAGC CGACGGCATC GCCGACTCCA TGATCAAGGA ATTTCCCAAG
CGCGCCGAAG GGCACCGTCT GAAGGGCCTG GTCCTGTACC AGCGCAAGCA GTATGCCGAG
GCAATGACCA GCCTGCAGAA CTCCATCAAG ATCGCTCCCA CCCTGGAAGC CTATTACTTC
ATGGGGCTCT GCCAGTACGG CCGGGGGGAG CTGGAGAGCA GCCTGAGCCA GTTCCGCCAG
GTCCTGGACA GGGTCCCCTC CTCCCGTCAG GCGCGGCTGA TGACGGCCAC CGTCCTTTTG
GCCCAGAAAC GCGTGGATGA CGCCATCGGC GAGATCAAAA AGGTGCTGCA GGCCGACGAC
AACGATGCGG TGGCCCACAA CCTGCTGGGC AATGCCTACA TGGCCAAGGG GATGTTCGAC
GAGGGGATGC GCGAGCTGAA CCGCGCCACG AGCATCGATC CCAGGATCGT GGATGCCTAC
CTGAAGAAGG GCTACTTCTA CTTCAGTCGC GGCAAGAACG CCGAAGGGGA GAGCGAGCTG
GCAACCGCGG TGAAGGTCGC TCCCGATGCC CTGAACAGCA GGATGCTCCT GGCCTCGTAC
TACATGAGGT CGGGCAGCGC TCCCAAGGCC CTGAACGTCC TCAAGGGGGG GCTGAGCGGC
AAAAAGGGTG ATGCGCTCCT CTACAACAGC ATTGCCTCGG TGCACCTCTC CCAGAACAGG
CCTGATCTGG CCCTGGCGAG CATCCAGAAG GCCAAGCAGG TCGACCCCGC GTTTCCCGCC
TCCTACCAGA ACCTGGCCAC CTACTATGCC GCCTCGGGCA AGTACGACAA TGCCATTGCC
GAATACAGTG CACTGCTGCG CGTCGATCCC CGCAACCTGC GCGCCATGCT CGGTCTGGCC
GCTTTGTACG AGATCAAGGG TAACGACCGC GAGGCGCTCG CCTTCTATGA CAGGGCAACC
GACACCGGCC AGCCCGCGGC TTTCCTGACA AAGGCCACCT ACCTGGCCAA GAAGCGCGAA
ACCGGCAAGG CCATAAAGGT CGTTGACGAA CTGCTCAAGA AGGATTCCCG TAATCTTGCG
GCGCTTGAGA TGAAGGGCCG CCTGCTGATG GTGGAAAAAG AGTACAAGCA GGCCGTCAAG
GTCTTTGATG AGGTGGAAGC GGTCAAGCCG GATGCGGGCG TTGCCCTCAA GATCGGCGCC
TACGTGGCAA TGAAGGATAC GTCCAAGGCC GTTTCCCAGG CCAGGGTCTT CATCGACAAG
TATCCCCGCT CCGCCAGGGG CTATCTGGTG CTTGCCTCCG TCCACGAGAG CCTGGGTGAC
CGCAACCGCG CCATGGCCGA GGTCAGAAAC GGCCTGCGGG TGGAACCGGG CAACGGGGAG
GCTCTGGTCA GGCTGGGTAA TCTGCTGGAG TCGGCCAGGG ACCACAACCA GGCCATGGCC
ATGTACGACG AGGCGCTGAA GAAGAATCCG AATTATGTGC CGGCCCTGTT CGCCCAGGGT
GCGCTGCTGG ACAGCACGGG CAAGAAGAAG GAGGCGGTGG CCAGGTACCG CGCCACCCTG
GCCAAGTCGG AAACCTATGT GCCTGCCCTG AACAACCTGG CCTATCTGTG CGCCTCCGGC
TTCGGCAGCA AAGAAGAGGC GCTCAGGCTG GCCGTCACCG CCTTCAAGCT GGAACCGGGA
AACGCCGGAA TCATGGATAC GCTTGGCTTT GCCCTGCTGA AGAACAGGCG CCTGGATGAC
GCCGCCAAGG TGCTGGAACG GGCAAGCACC CTGCTGCCCA CTAATCCCAC CGTTACCTAT
CACCTGGCCC TGGTGTACGC GGAGCGGGGA GACAGGGCCA GGGCAACGAC GCTGCTGCAG
AAGTCGCTCT CCCAGGGTGC GTTTGCCGAC GCTCCCGCGG CCAGGTCGCT CCTTGCCGGG
TTGAGGAAGA GATAA
|
|---|
| Protein sequence | MRLKLIAALL IVLTVCSACG RKSKEELLAE GIKQLGASNP SGAVVLFKNA LEKDENYLDA
RFQLAKAYAR LGKNEQAERE FLKVLKQNPS RDEAIVELAA VYNATRKGDQ AFALGEQYLA
KHPGSAEGLE ILGIACAVTK RFDDAERYLQ QALAASPSRS KTRLELAGVY VAAGKEQQAK
AVLEELVRSD PKNFKGFYML AAIEKSGGNR DRALEIYTRI LSMDRSETLA AYKSGLIQIE
KGDLPKADGI ADSMIKEFPK RAEGHRLKGL VLYQRKQYAE AMTSLQNSIK IAPTLEAYYF
MGLCQYGRGE LESSLSQFRQ VLDRVPSSRQ ARLMTATVLL AQKRVDDAIG EIKKVLQADD
NDAVAHNLLG NAYMAKGMFD EGMRELNRAT SIDPRIVDAY LKKGYFYFSR GKNAEGESEL
ATAVKVAPDA LNSRMLLASY YMRSGSAPKA LNVLKGGLSG KKGDALLYNS IASVHLSQNR
PDLALASIQK AKQVDPAFPA SYQNLATYYA ASGKYDNAIA EYSALLRVDP RNLRAMLGLA
ALYEIKGNDR EALAFYDRAT DTGQPAAFLT KATYLAKKRE TGKAIKVVDE LLKKDSRNLA
ALEMKGRLLM VEKEYKQAVK VFDEVEAVKP DAGVALKIGA YVAMKDTSKA VSQARVFIDK
YPRSARGYLV LASVHESLGD RNRAMAEVRN GLRVEPGNGE ALVRLGNLLE SARDHNQAMA
MYDEALKKNP NYVPALFAQG ALLDSTGKKK EAVARYRATL AKSETYVPAL NNLAYLCASG
FGSKEEALRL AVTAFKLEPG NAGIMDTLGF ALLKNRRLDD AAKVLERAST LLPTNPTVTY
HLALVYAERG DRARATTLLQ KSLSQGAFAD APAARSLLAG LRKR
|
|---|
| |