| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_2172 |
|---|
| Symbol | |
|---|
| ID | 4575087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | + |
|---|
| Start bp | 2344950 |
|---|
| End bp | 2346341 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639756220 |
|---|
| Product | sigma-54 dependent trancsriptional regulator |
|---|
| Protein accession | YP_901838 |
|---|
| Protein GI | 118580588 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTTATTGT TCCAACCAAA CACCGTATCC TCACCATCAA AAAGAAAACA GGGTATCCCG
GCGCGCAAGC TACTGTGCGT GTCGCCTGAC GGAGCACGTC AGGCCTCCGC CCAACCCCTT
GCCGAAGAAG GCTGGGACAT ACTGACGGCA CCTGACCTGA AACTGGCCAG GGAGTTGACC
AGGCAGCATA AAGACTGTCA TGTGGGACTG CTCTTTCTGA AAAGTGGTAC GGATGCCTAC
CTGAACCAAA TTGAAGAAGT CCTGATGGTG AACAACCAGA TTGAATGGAT TTCCGTCTTG
CCCCCCGAAT GCATGCAATC ACGTGACCTC TGCGCATTCG TTATCAAGAA CTCCTACGAC
TATCACACCC TTCCACTGGA TATCCCCCGT TTGCATTTTA TTCTCGGGCA TGCATACGGC
AAGGCTCTGC TGAAATGCAA AGTTGCCGGC AGGGAACAGG TTATCGGCCA GAACCAGATG
ATCGGAACAA GCGCGCCAAT GCGTGACCTG TATGCAAGAA TCATCAAAAT ACAAAAAGTC
GAGTCACCCG TCCTTATCCA CGGGGAGAGC GGTACGGGCA AGGAGCTTGC GGCGCGTGCG
ATTCACCAGA ATTCATCGCG TTGCCAGGCG CCTTTTGTCG CGGTGAATTG CGGGGCCTTG
CCGACACACC TCATCCAAAG CGAATTATTC GGACACGAGA AAGGGGCTTT TACCGGAGCA
ACCCAGAGAA AGATCGGCCG CATCGAATCG GCGGCGGGTG GAACCATCTT TCTGGACGAG
ATCGGAGATC TTTCACAGGA ACTCCAGGTA AACCTTTTGC GGTTCTTGCA GGAAAAGACC
ATCGAGCGTG TCGGCTCAAA CCAGACCATT GAAGTTGACG TGCGCGTTAT AGCCGCTACC
CATGTGAACC TGGAAAAAGC CGTGGAACAG GGTGTTTTTC GCGAGGACCT CTATTACCGA
CTGAATGTCC TGCGTCTGGA TATTCCACCA TTACGCGAAC GAGTCGGGGA CATAGAAATC
CTGGCGCTCA CTTTTTTTGA AAAATTCTCC GAAGAAAAGA ACCCCGTGGT CAAGGGATTC
AGCCAGCAGA CCTTGAATAT CATGGCTGAA TATGACTGGC CGGGTAATGT TAGAGAAATG
ATAAATCGAA TACGAAGGGC GATGGTGATG AGCGAGAACC GGCTGATCAC ACCCGCTGAC
CTGGAGCTGG ACAATCTGGT GGTCTTAAAC AAATCGCTAT CGCTGGATGA TGCGCGAGTG
CTGGCGGAAA CCGAGATAAT CCAGCATTCC CTCATACAGA ACAACAAGAA TGTCTCCAAG
ACCGCGCGCG ATCTCGGCGT ATCGCGCGTT ACGCTGTACA GGTTGATAAA CAAACTGAAT
ATCATCGTCT AG
|
|---|
| Protein sequence | MLLFQPNTVS SPSKRKQGIP ARKLLCVSPD GARQASAQPL AEEGWDILTA PDLKLARELT
RQHKDCHVGL LFLKSGTDAY LNQIEEVLMV NNQIEWISVL PPECMQSRDL CAFVIKNSYD
YHTLPLDIPR LHFILGHAYG KALLKCKVAG REQVIGQNQM IGTSAPMRDL YARIIKIQKV
ESPVLIHGES GTGKELAARA IHQNSSRCQA PFVAVNCGAL PTHLIQSELF GHEKGAFTGA
TQRKIGRIES AAGGTIFLDE IGDLSQELQV NLLRFLQEKT IERVGSNQTI EVDVRVIAAT
HVNLEKAVEQ GVFREDLYYR LNVLRLDIPP LRERVGDIEI LALTFFEKFS EEKNPVVKGF
SQQTLNIMAE YDWPGNVREM INRIRRAMVM SENRLITPAD LELDNLVVLN KSLSLDDARV
LAETEIIQHS LIQNNKNVSK TARDLGVSRV TLYRLINKLN IIV
|
|---|
| |