| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_1940 |
|---|
| Symbol | |
|---|
| ID | 4574278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | + |
|---|
| Start bp | 2089269 |
|---|
| End bp | 2091902 |
|---|
| Gene Length | 2634 bp |
|---|
| Protein Length | 877 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639755987 |
|---|
| Product | RND efflux transporter |
|---|
| Protein accession | YP_901607 |
|---|
| Protein GI | 118580357 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1033] Predicted exporters of the RND superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAAC TGAAAGACAC GATAATTGAT GTTTCCATCA GACGCTACAA GCTGGTAGCC
GTTGCCATTG TCCTGTTCAC CATCGTTACC GGCGCTTTTT TTCCGATGAT CACCATCGAT
ACGGATCCGG AAAACATGCT TGAAAAAGAT GAGCCGGTAC GGGTCTTTCA CAACCAGAGC
AAGAAGCGCT TCAACCTGAG CGAGACCATC GTGCTGGGGG TTGTCAACGA ACGCGATCCG
GACGGAGTGT TCAACCCGGA AACTCTCAGG CGGGTCTACG AACTGACCGA GTTCGCCAGG
ACGCTGCGCT GGGAGGACAC CAAGAACCCC GGACATACGT CGGGGGTCAT CGAAACGGAC
ATGATCGCCC CCTCGCTGGT GGACCATATG ACCCAGGATG GACCGGGTAC ACTGCGTTTT
GAGTGGCTCA TGGCCGCTCC GCCGGAAACC AGGGAAGAGG CGCGGGCGAT TCGCGACAAG
GCGCTCTCCA ACCCGCTGCT TAAGGACCAG ATGGTCTCCT GGGACGGAAA AGCCCTCTGC
CTGTACCTCC CCTTGACGGA CAAGCTGCTC AGTTACCGCG TCTATGAAGA ACTGAACAAG
AAAATCGGTC AGTTGGGAGG GGACGACCAG TACCACATCG CCGGGCTTCC GGTGGCGGAG
AGCGCCGTCG GCGTGGAGAT GTTCAACCAG ATGACGGTGG CAGCCCCCCT GACCATGCTG
GTCATCTTCG GTCTGCTGCT CCTCTTTTTC CGTCGTCTGA CGCTGATCAT CCTCCCCATG
ATCGTTGCCA CGGTGGCGGT GGTTTCCGCC CTGGGGCTGA TGATCGCCTG CGGGTATCCG
GTGCACATCT TAAGCTCCAT GCTGCCCATC TTTCTGATGC CCATCGCCAT CTGCGATTCG
GTCCATATCC TCTCGGATTT CTTCGAATGC TACACACAGG AAAAAGGGCG CGCGCAGACC
ATCAGGGAGG TGATGGGCGC GCTGTTCGCG CCGATCACCT CCACGTCGCT GACAACCGCC
GCCGGGTTTC TCTCCTTCGT CACCACCGAT ATCCCGCCGG CCCGGGTATT CGGCGTGTTC
GTGGCTCTGG GGGTGATGAT CGCCTGGGCA ACGACGGTAC TGCTGGTTCC GGCCTACGTG
ATGATGCTTC CCGAACGGGT GCTGGAAGGA TTCGGCAGGG ACACGACAGC CGCAGCGGAA
CGGCACACCA GGCTGGGCGT TTTTCTGCAG TGGCTGGGCG GGTTCGCATG CAGGCGCGCC
AAACCGGTAC TGGGCGTGCT GGCGCTGCTG ATCGTTGTGG CCACCTGGGG CATTTCGCGC
ATCACTATCA ATGACAACTA CGCCAAACGT TTCAGCACCG GCCATCCGAT CCGCACGGCC
GACCAGGCCC TTAACCGGCA CTTCGGGGGA ACCTACACCG CCTATCTGGT GCTGGAGGAA
ACCAGGGGGG CCAAACCGAC ATCCCGGGAC GTCGCGGAGT TGGACCAGGC TCTTGTGGAG
GCAGCCGGAG GGATCGAGGA TTCCAGTGGC ACGAAACAGA CACTCGTCGC GGAACTGCGC
CGGCGTCTGC CGCTCTTCGC CCGGCGGTCC GACAGCCGGC AGGAGCTTCT GGACGAAGCC
GTGAAGTTTC TTGATGAGCG TTTTCAAGGC AGCGCCAAGG ACAAAGCGTA TGTTTCGCGG
GAGCTGAAGA GCTTTTTCGA AGGAGAAAAG GAACGCCTGA AACCGTTCAA GCGCCCTGAA
GTGCTGCGCT ACATGGCCGG ACTCCAGGCC CATCTGGTAC ACGCGGGCAT CGTGGGTAAA
ACCACGTCAG CCGCCGATGT GGTCAGCAAG GTCAACCAGG AACTGATCGA CGGCAGAGCG
GAACACTTCC GGGTCCCCGA CAGCTTCCGT GGGGTATCAG AATGCTACCT TCAGTATCAG
CAGAGCCACC GTCCCGACGA CCTCTGGCAT CTGGTGACGC CCGATTACGG CAGCGCCGCG
ATCCGGATGC AGTTCAAGCA GGGAGACAGC ACCCAGACCG ACAAGGCGGT CCGGGCCGTG
GACACCTACC TCAAGGCTAA TCCCCCCCCG CTGGGACTCT CGCACCGCTG GGCCGGGCTT
CATTACGTCA ACCTCGTCTT CCAAGAGATC ATGTTCCGCC AGATGCTGGG TTCGTTCGTG
GGGTCGTTCA TCATCGTGTT CGTCATGATG GCTGTTCTCT TCCGGTCGCT GCTCTGGGCA
ACCGCCTGCA TGCTGCCGCT CTCCATCACC ATCGCCGCCA TCTACGGGAT CACCGGAATC
GTGGGCAAGG ATTACGACAT GCCGGTGGCG GTCATGAGCG CCATCACGCT GGGCATAGCG
GTTGATTTCG CGATTCACTT CCTGGAGAGG AGCCGGCGTC TGTACCGGGA GACAGGCTCC
TGGAAGGCGA CGGTTCCCCT GGTGTTCGGA GAACCTGCCC TGGCGATCTC CAGGAACGTG
CTGGTGGTGG CGCTGGGCTT CCTGCCGCTG ATGGTGGCGC ATCTGGTGCC CTACAAGATC
ACCGCGGTAC TGCTCTTCGG TATCCTCTCT ACCTCCGGCC TGGTGACGCT GCTCTTCCTG
CCCGCGCTCC TGACCGTGGC AGAGAAGCGG TTTTTCGGCA CGGCCGCTGG ATGA
|
|---|
| Protein sequence | MLKLKDTIID VSIRRYKLVA VAIVLFTIVT GAFFPMITID TDPENMLEKD EPVRVFHNQS
KKRFNLSETI VLGVVNERDP DGVFNPETLR RVYELTEFAR TLRWEDTKNP GHTSGVIETD
MIAPSLVDHM TQDGPGTLRF EWLMAAPPET REEARAIRDK ALSNPLLKDQ MVSWDGKALC
LYLPLTDKLL SYRVYEELNK KIGQLGGDDQ YHIAGLPVAE SAVGVEMFNQ MTVAAPLTML
VIFGLLLLFF RRLTLIILPM IVATVAVVSA LGLMIACGYP VHILSSMLPI FLMPIAICDS
VHILSDFFEC YTQEKGRAQT IREVMGALFA PITSTSLTTA AGFLSFVTTD IPPARVFGVF
VALGVMIAWA TTVLLVPAYV MMLPERVLEG FGRDTTAAAE RHTRLGVFLQ WLGGFACRRA
KPVLGVLALL IVVATWGISR ITINDNYAKR FSTGHPIRTA DQALNRHFGG TYTAYLVLEE
TRGAKPTSRD VAELDQALVE AAGGIEDSSG TKQTLVAELR RRLPLFARRS DSRQELLDEA
VKFLDERFQG SAKDKAYVSR ELKSFFEGEK ERLKPFKRPE VLRYMAGLQA HLVHAGIVGK
TTSAADVVSK VNQELIDGRA EHFRVPDSFR GVSECYLQYQ QSHRPDDLWH LVTPDYGSAA
IRMQFKQGDS TQTDKAVRAV DTYLKANPPP LGLSHRWAGL HYVNLVFQEI MFRQMLGSFV
GSFIIVFVMM AVLFRSLLWA TACMLPLSIT IAAIYGITGI VGKDYDMPVA VMSAITLGIA
VDFAIHFLER SRRLYRETGS WKATVPLVFG EPALAISRNV LVVALGFLPL MVAHLVPYKI
TAVLLFGILS TSGLVTLLFL PALLTVAEKR FFGTAAG
|
|---|
| |