Gene Ppro_1599 details

Gene Information

• Locus tag: Ppro_1599
• ID: 4571608
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter propionicus DSM 2379
• Kingdom: Bacteria
• Replicon accession: NC_008609
• Strand: +
• Start bp: 1708271
• End bp: 1709995
• Gene Length: 1725 bp
• Protein Length: 574 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 639755643
• Product: sigma-54 dependent trancsriptional regulator
• Protein accession: YP_901272
• Protein GI: 118580022
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0000201949
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTTCTG TTATGCAACC ATCCAGCTTT CGCATACTGC TTGTTGACGA TGAAGAGGGA 
ATCCGTTTTA CTCTGGGATG CCTGCTGAAG AAGGAGGGCT TTCGGGTGGA GGTTGCTGCG 
GGGCGCGGTG AAGCTCTTGC CCTGCTGGCT GCCGCCCCTT TTGATCTGGC CCTGGTGGAT 
ATCATGCTGG CCGGGGAGAG CGGCATCGGG CTTTTGGGCG ATATAAAGAG TATGTACCCG 
TCGACGCAGG TAATCATGAT CACCGGCCGT CCCGAGGTGG ATACCGCGGC GGAAGCGGTC 
CGGTTGGGGG CATTCGACTA TCTCACCAAG CCGATCCGCC ACGAAACCCT GATGGCGGTC 
AGCCGTCATG CCCTGAGCGC GAAGAAGATG AACGATGAGA GGGAGCTGTA TCGCGCCAAT 
CTGGATGCCA TCTTTCGCAC CGTTACGGAT TCCATCGTGA TGGTGGACCG GGAGGGGTGT 
CTGGCCCAGT TCAATGCGGC AGCGGGACAT CTCTGCGGAC TGAACGGCGA TATGATCGGG 
ATGGATCTGG CTGCCCTCAA CCTGAGCTGT AACGGTATGT GCGCCGCCAC CCTGCTGGAA 
ACGCTGCGCC GCAATGTCCC CCAGGAATTG CGGCGATTCG AGTGCCGCAA CCGGGAGGGC 
AAGCCGCGCG TGGCCTCGTT TACCTCCACG CCGGTGGTGG ATGCGGACGG AACGGTGGAT 
GGCGCGGTGG CGGTCATCCG CGACGAGACG CGCCTGGTGG ATCTGGAACG CTCCCTGCGT 
ACCAGAAGCA CATACCACAA CATCGTCGGC AACTCGGCGC CCATGCAGCG CCTGTTCGCC 
CTGATCGAGG CGCTTGCCGA CGTGCCGACC ACGGTTCTGA TCAACGGCGA GAGCGGAACC 
GGCAAGGAAC TGGTGGCGGC CGCCCTGCAC GCCACCGGCG CGCGTTCAGG AGGTCCGTTC 
GTGAAGGTCA ACTGCTCGGC CCTGTCCGAG TCGCTTTTGG AGAGTGAACT GTTCGGGCAC 
GTGCGCGGGG CGTTTACCGG CGCCATTGCC GACAAGGTCG GCCGTTTCCA GAAGGCCCAC 
GGCGGAACGC TCTTCCTGGA TGAGATCGGC GATATCTCGT CTGCCGTGCA GATGCGGCTT 
CTGCGGGTCC TGCAGGAAAG CGAGTTCGAG CGGGTAGGGG AGTCTACGCC CCTCCGGGTG 
GATGTGCGCA TCATAGCCGC AACCAACCAG AATCTGGCCG ATAAGGTCAG TCAGGGAACG 
TTCCGCCAGG ATCTCTTCTA CCGCCTGAAT GTGGTCCGGG TGGTGCTGCC GGCGCTCAGG 
GAACGCCTGG ACGACCTTGA ACCGCTGGTG GCTCATTTTA TTGCAAAGTT CAACGTCAAG 
TTCGGTCGGG ACATTACCGG TGTGTCCAGT GATGCCATGG CTGTCTTCCA CAGGCACGAC 
TGGCCGGGCA ATGTGCGTGA ACTGGAGCAT GCCATTGAGC ATGCCAGCAT TCTCTGCAAA 
TCCGATATCA TCTCCCTTTC CGACCTTCCG CAGGATTTGC TCGATTCCCT GCGGGCCGAC 
GACGCTTCCC CGGTTGATGC TCCTGTTGCC CCTTCTTCAC GACCGCCTCT TACCCTGGAG 
GAGGCTCTGG TGATGACTGG CGGCAACAAG AGCCGCGCCG CCGACCTGCT GGGCATCAGC 
CGACGCACGG TATACCGGCA CCTGGAAGAG TGCCAATCAA AATAG 

 

Protein sequence

MISVMQPSSF RILLVDDEEG IRFTLGCLLK KEGFRVEVAA GRGEALALLA AAPFDLALVD 
IMLAGESGIG LLGDIKSMYP STQVIMITGR PEVDTAAEAV RLGAFDYLTK PIRHETLMAV 
SRHALSAKKM NDERELYRAN LDAIFRTVTD SIVMVDREGC LAQFNAAAGH LCGLNGDMIG 
MDLAALNLSC NGMCAATLLE TLRRNVPQEL RRFECRNREG KPRVASFTST PVVDADGTVD 
GAVAVIRDET RLVDLERSLR TRSTYHNIVG NSAPMQRLFA LIEALADVPT TVLINGESGT 
GKELVAAALH ATGARSGGPF VKVNCSALSE SLLESELFGH VRGAFTGAIA DKVGRFQKAH 
GGTLFLDEIG DISSAVQMRL LRVLQESEFE RVGESTPLRV DVRIIAATNQ NLADKVSQGT 
FRQDLFYRLN VVRVVLPALR ERLDDLEPLV AHFIAKFNVK FGRDITGVSS DAMAVFHRHD 
WPGNVRELEH AIEHASILCK SDIISLSDLP QDLLDSLRAD DASPVDAPVA PSSRPPLTLE 
EALVMTGGNK SRAADLLGIS RRTVYRHLEE CQSK