| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_1189 |
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| Symbol | |
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| ID | 4574660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter propionicus DSM 2379 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008609 |
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| Strand | + |
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| Start bp | 1239584 |
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| End bp | 1241623 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639755230 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_900869 |
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| Protein GI | 118579619 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000101315 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCCAG CCAAATATAA GATTTCAAGC TCGTTGACGT CTCTCAACGC GGAGCCGGTG
GAGCAGGCTC CCCTTCCCGC GAAAAGAACC GGCTCGAAGG TGCACCGTCT TCCACCTTCC
ATCTGGAAGA AGATGGTTGC CGAGGCAAAA AGCCCCCTGG ACAAGGGGAT TGAGCGCACG
CGGGACTTTT TCCTGCGCGA GCAGCTCCCC GACGGCTACT GGTGGGCGGA GCTGGAATCC
AACGTAACCA TCAGCGCCGA ATACGTTATG CTGTTCCACT TCCTGGGGAT GGTTGACCGG
GAGCGTGAGC GCAAACTGGC CAACTACATC CTAGCCAAGC AGACCTCCGA GGGGTTCTGG
TCCCTCTGGC ACAACGGCCC CGGCGACCTC TCCACCACCA TCGAAGCCTA TTTTGCCCTC
AAGCTGGCCG GCTATTCGGC CGACCATCCG GCCATGGCCA AGGCGCGGGC TTTCGTCCTG
GCTAACGGCG GCATCATCAA GGCCCGGGTC TTCACCAAGA TCTTCCTGGC GCTGTTTGGC
GAGTTCGCCT GGTTCGGCGT CCCCTCCATG CCCATCGAGC TGATGCTGCT CCCCGACTGG
GCCTATTTCA ACATGTACGA ATTCTCCAGC TGGTCCCGCG CCACGATCAT CCCGCTGTCG
GTGGTCATGT CGGAACGGCC GGTGCGCAAG CTACCGCCGC GGGCCCAGGT CCAGGAACTC
TTTGTCCGGC CGCCGCGGCC CACCGATTAC ACCATCACCC GCGAGGACGG CCTCTTCACT
TGGAAGAACT TCTTCATCGG TGCCGACCAT CTGATCAAGG TCTATGAGTC GTCGCCGATC
CGTCCCTTCA AGAAGAGGGC GGTTGCCCTG GCCGAGAACT GGATCCTGGA GCACCAGGAG
CAGTCCGGCG ACTGGGGCGG CATCCAGCCG GCCATGCTTA ACTCCATCCT GGCCCTGCAC
TGTCTGGGAT ATGCCAACGA CCACCCGGCG GTGGCCAAGG GGCTGGACGC ACTGGCCAAC
TTCTGCATCG AGGACGACGA CTGCATCGTG CTGCAGTCCT GCGTCTCGCC GGTGTGGGAC
ACGGCTTTGG CGCTGGTGGC GCTGCAGGAG GCGGACGTGC CCGCCGACCA TCCCGCCCTG
GTCAAGGCAG CCCAGTGGCT TCTGAACCTT GAGGTGCGGC GCAAGGGGGA CTGGCAGGTG
AAGTGCCCCG AACTGGAGCC GGGCGGCTGG GCCTTCGAGT TCCTCAACGA CTGGTATCCG
GACGTGGACG ACTCCGGGTT TGTCATGCTG TCCATCAAGA ACATCAAGGT TCGTGACCGC
AAGCATCGGG AAGAAGCCAT CAAGCGAGGC ATCGCCTGGT GCCTGGGCAT GCAGAGCGAG
AACGGCGGCT GGGGCGCCTT CGACCGGAAC AACACCAAGT ACCTGCTCAA CAAGATCCCC
TTTGCCGACC TGGAAGCGTT GATCGATCCC CCTACGGCGG ATCTGACCGG CCGCATGCTG
GAGCTGATGG GCAATTTCGA CTACCCCAAA AGCCACCCCG CAGCCGAGCG TGCCCTGGCC
TTCCTCAAGA AGGAGCAGGA GTCGGAAGGA CCCTGGTGGG GGCGCTGGGG GGTCAACTAC
CTCTACGGCA CCTGGTCGGT ACTCTGCGGC CTGGAGGCCA TCGGCGAGGA TATGAACCAG
CCCTACATCA GGAAGGCGGT CAACTGGATC AAATCCCGCC AGAACAACGA CGGCGGCTGG
GGCGAGGTGT GCGAGTCCTA CTTTGACCGT TCCCTGATGG GGAGCGGGCC GAGCACCGCC
TCCCAGACCG GTTGGGCGCT GCTGGCCCTG ATGGCGGCCG GAGAGGCCAA CTCCCGGGCA
GCGGCCCAGG GTGTCAAGTA CCTTCTGGAG ACCCAGAACG AGGACGGCAC CTGGGATGAG
GATGCTTTTA CCGGAACCGG TTTTCCCAAG TTCTTCATGA TCAAGTATCA CATCTATCGC
AACTGCTTTC CGCTGACCGC GCTGGGCAGA TACCGCAGGC TGACCGCCGC CAAGGGGTAA
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| Protein sequence | MNPAKYKISS SLTSLNAEPV EQAPLPAKRT GSKVHRLPPS IWKKMVAEAK SPLDKGIERT
RDFFLREQLP DGYWWAELES NVTISAEYVM LFHFLGMVDR ERERKLANYI LAKQTSEGFW
SLWHNGPGDL STTIEAYFAL KLAGYSADHP AMAKARAFVL ANGGIIKARV FTKIFLALFG
EFAWFGVPSM PIELMLLPDW AYFNMYEFSS WSRATIIPLS VVMSERPVRK LPPRAQVQEL
FVRPPRPTDY TITREDGLFT WKNFFIGADH LIKVYESSPI RPFKKRAVAL AENWILEHQE
QSGDWGGIQP AMLNSILALH CLGYANDHPA VAKGLDALAN FCIEDDDCIV LQSCVSPVWD
TALALVALQE ADVPADHPAL VKAAQWLLNL EVRRKGDWQV KCPELEPGGW AFEFLNDWYP
DVDDSGFVML SIKNIKVRDR KHREEAIKRG IAWCLGMQSE NGGWGAFDRN NTKYLLNKIP
FADLEALIDP PTADLTGRML ELMGNFDYPK SHPAAERALA FLKKEQESEG PWWGRWGVNY
LYGTWSVLCG LEAIGEDMNQ PYIRKAVNWI KSRQNNDGGW GEVCESYFDR SLMGSGPSTA
SQTGWALLAL MAAGEANSRA AAQGVKYLLE TQNEDGTWDE DAFTGTGFPK FFMIKYHIYR
NCFPLTALGR YRRLTAAKG
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