| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_0996 |
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| Symbol | |
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| ID | 4574788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter propionicus DSM 2379 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008609 |
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| Strand | + |
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| Start bp | 1040015 |
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| End bp | 1042609 |
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| Gene Length | 2595 bp |
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| Protein Length | 864 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639755036 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_900681 |
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| Protein GI | 118579431 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGAATT CCGCCGAATC CGCACAGGAT ATGTCGCAAG TTACTCACAA AACTCTTGCC
GCAATCGAGT CGATAACGGT GCTCGGGGAA GGGAGCGCGG CGGAACTTGT TATCAAACTG
TCCGCACCGA CCACCTACAC CAGTTACAGG ACCACGTCTC CCTTGCGGCT TGTTATAGAC
CTTTCCCAGT CAGGCCAAGG TGCGATCATG GCGCCGGTAG TGCTGAACAG TGGCAATTTC
AAGGCTGTTA CAGTAAGCAG TTATGACACC GACGCCGGAG TGTTGACCCG CCTGGATGTA
GAACTTGTTA AGGATGCTGA TGCCGTTCTG AGTGTGTCAA AAGAAAAACC GACTGAAATC
CGGGTCTCAT TCCCGTCGCT ATCTTCTCCC ATCACGGAAA CGCCCGTTTC AGCTGCTGTT
ACGGACAATT CCGTAGTTAC AGGAAATTCT TCGCCGCAGC CCCAGGAAAC CACGGCAGCT
ATACCGGAAC CGGTCCCGTC AGCACAAAGC GCAACTATCC GTGCCCTGAC GGCTGTGTCC
GTCAAGAACA ATGCTATCGT ACTCGCCATT GATGGCGGTG TTGGTGAGTT TACAGCGTTC
CGGCTGAGTA AGCCTGATCG TTTCGCGATA GATCTCCATG GCGTGAAGAG TGTTCTGGCG
TCGAGATTGT TTTCCGTAAA TGCTTTTGGC GTTTCATCAG TTCGTTTGGG ACTTTACCCT
GACAAGGTGC GTGTCGTGCT TGATGCGGTC GATGGTGCTT TGCCCAAGGT GGTTGCGGAG
AAAACAAACG AGGGCATACG CGTGGCGCCG ATGGATACCT CTTCAGTATC CGTAGCCACC
CGGGGGGACG GTGCGACCGC CTCAACCGCG AACAATGGGC CAGCACCTGC CTCCCGGGCC
GATGATATGA AACCAGCCGC TACTCTGTCC GTGCCACGTG TCGACATGAT TGATTTTCAG
GTTGTAAATG GTATTTCCCG TGTTGCCGTG AAAGTGGTCG GTAATGCCGT TGCGGAGCCG
CCTGAAAAGA GTCCTGGCTT TGTGACGCTG ACCATCAAGA ATACGAGTCT ACCCAAGAGC
TTGCAACGCT CCTTGGAAGC AAAGGGCTTT TGGTCTCCGG TTTTGCGCGT TACCCCGCTT
CTTGTGACTA CCCGTAAGGG AACAGACACG AAAATCCGCA TTGCCATGCG GAAAACGGTG
CCGTATGAGT ATCGTCGTGA AGGTGACATG CTTTTCATTG ATTTCAAGAA CCCGGAAGGC
ATGATTGCTG AGAAACCGGC AGTACCTTAT CTGGTTGCGA AAAGTGGCGA GGAGCCTCCT
GGCAGCGATG CCGCGCTTAG GTCCGAGCTT GCCTCTTCCC CGGACCCTTC ACGCAAGCCA
TTAGGATCCG CAAAGGAGTA CTGGGGGAGA AAGGTCACTC TCGAGTTTGC TGATGCTGAG
GTGCGTAAAA TATTCCAGTT GTTATCCGAA GTGAGTAACA AGAATTTCGT GCTGGGAGAC
GATGTGACTG GAACCATAAG CATCAAACTG GTCAATGTGC CCTGGGATCA GGCTCTGGAT
ATCATTCTTG ATGCAAAAGA CCTTGAAACG CGTGAAATAG GGAATGTCTT GACAATCAAA
AAACGAGGTG CGTTTAAGGA ACAGTTGGTA AAGCAAACCA CGTATACGGA GTACTTTTCC
GTTAACTACA GTGATGCAAA ATCGATCAAG CCGCAATTAG AAGCGTTGCT TGATCCTGTT
CTGTTAAAGG AAAAGTTGGC TACCATCACT GCTGATGACC GTACTAACAC GATTATTGTC
ACTTCCGTGC AGTCGGATAT AGACAGAATT AGGGCACATC TGGTGAAGAT GGATATTCCG
GAAAAGCAGG TCATGATCGA AGCGCGCATA GTGGAGGCCA CATCCACCTT TACCCGCAGT
CTGGGGGTGA ACTGGGGAGT TCACTACACC GATGCTTCCG GGTCGCTGCT GGGGATTACC
CAGCTGGATA CCGGCTTCGG CGGCATAACA ACCGCTCCGC CTACCAGCGG TACCGGAGAT
TCAGCAGGTG GAAATATGGG CATTTCCTTC GGTGCCCTGG GGAATGGTGT CCAGCTTGAT
ATGCGGCTAA GCGCCGCAGC CACCGCTGGT TTGATCAAGA TCATCTCCTG CCCAAAGGTT
GCTACGCTTA ATAATAAGAA AGCCAAGATC GCTCAAGGGC AGCAGATTCC CTATACTGCA
TCTGATGGTG ATAATGTGGA GACAAAGTTT GTCGAAGCTG CCCTGTCGCT CGAGGTTACG
CCGCACATCA ACGCCAACGG CACCATCAGC ATGAACATTG TAGCAAAGAA TGATTCTATG
GGGGACGCCG TGGGTAGTTC TACTGCGCCT GCCATCAATA CCAAAGAGGC AACGACTGAG
ATGCTGCTGC GTGACGGAGA GACAACCGTT ATTGGCGGCA TATTCGTGGA CACTGACAAT
GATTCGGATG CTGGCGTTCC CTTCCTTATG GATATTCCGG CTATCGGTAA GTTCTTTAAG
ACGAACAGCA AAACAAAAAC CAAGACTGAA CTGCTGGTTT TTATTACACC GCGTATCATG
GCGACGACTC TGTAA
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| Protein sequence | MPNSAESAQD MSQVTHKTLA AIESITVLGE GSAAELVIKL SAPTTYTSYR TTSPLRLVID
LSQSGQGAIM APVVLNSGNF KAVTVSSYDT DAGVLTRLDV ELVKDADAVL SVSKEKPTEI
RVSFPSLSSP ITETPVSAAV TDNSVVTGNS SPQPQETTAA IPEPVPSAQS ATIRALTAVS
VKNNAIVLAI DGGVGEFTAF RLSKPDRFAI DLHGVKSVLA SRLFSVNAFG VSSVRLGLYP
DKVRVVLDAV DGALPKVVAE KTNEGIRVAP MDTSSVSVAT RGDGATASTA NNGPAPASRA
DDMKPAATLS VPRVDMIDFQ VVNGISRVAV KVVGNAVAEP PEKSPGFVTL TIKNTSLPKS
LQRSLEAKGF WSPVLRVTPL LVTTRKGTDT KIRIAMRKTV PYEYRREGDM LFIDFKNPEG
MIAEKPAVPY LVAKSGEEPP GSDAALRSEL ASSPDPSRKP LGSAKEYWGR KVTLEFADAE
VRKIFQLLSE VSNKNFVLGD DVTGTISIKL VNVPWDQALD IILDAKDLET REIGNVLTIK
KRGAFKEQLV KQTTYTEYFS VNYSDAKSIK PQLEALLDPV LLKEKLATIT ADDRTNTIIV
TSVQSDIDRI RAHLVKMDIP EKQVMIEARI VEATSTFTRS LGVNWGVHYT DASGSLLGIT
QLDTGFGGIT TAPPTSGTGD SAGGNMGISF GALGNGVQLD MRLSAAATAG LIKIISCPKV
ATLNNKKAKI AQGQQIPYTA SDGDNVETKF VEAALSLEVT PHINANGTIS MNIVAKNDSM
GDAVGSSTAP AINTKEATTE MLLRDGETTV IGGIFVDTDN DSDAGVPFLM DIPAIGKFFK
TNSKTKTKTE LLVFITPRIM ATTL
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