| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_0988 |
|---|
| Symbol | |
|---|
| ID | 4573210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | + |
|---|
| Start bp | 1034026 |
|---|
| End bp | 1034541 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639755028 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_900673 |
|---|
| Protein GI | 118579423 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.330838 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGGAA AGGAGAATAT CAATTCCTCG CGGGGCTTTT CGCTGACCGA GTTGATCATC
GTGATCTTTC TGATCTCGGC TGTTCTCGCC ATAGCCACTC TGAATTTCAG TCACTGGCAG
AGAAAGTACA ACATCGAAGC CCAGGTGAAG GAAATGCTCT CCGACCTGAC CGCCGTGCGC
CAGATGGCCA TCCAGACCAA GAAGAGACAT CGGGTGACCC TGAACCCGAA GATGATTTCG
TTTCGCCGCT ACAGCAGTGA ATCCGATGCA ACGGGCACTC CGGTGTTCAA TAGGAATCTG
AATTATACGA TTCAGAAGTT TTCATCGGGC ACCTTAAGCT CTTTTAGCGA TACCGTCATC
AAGATTAACG ACCGAGGTTA TACAGAGAGT GTTAGCGATC ATATGACTAT TGCAGTGGGC
GTTGGCTTGG GTGAGCCTGC GTACAACTGT CTTGTTGTTC ATTGGGCACG GGTTAATGTG
GGGAAAATAA ATGGCAATTC ATGTGAGTTC CAATAG
|
|---|
| Protein sequence | MAGKENINSS RGFSLTELII VIFLISAVLA IATLNFSHWQ RKYNIEAQVK EMLSDLTAVR
QMAIQTKKRH RVTLNPKMIS FRRYSSESDA TGTPVFNRNL NYTIQKFSSG TLSSFSDTVI
KINDRGYTES VSDHMTIAVG VGLGEPAYNC LVVHWARVNV GKINGNSCEF Q
|
|---|
| |