| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_0530 |
|---|
| Symbol | |
|---|
| ID | 4572712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | - |
|---|
| Start bp | 566000 |
|---|
| End bp | 566995 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639754567 |
|---|
| Product | peptidoglycan-binding LysM |
|---|
| Protein accession | YP_900219 |
|---|
| Protein GI | 118578969 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCA GATCAGTGAT AGTGTTCCTG TTGGCGCTGA CCATGCTGTT ACCCGGCCTG
GCAGCGGCTG TCGAGCAGGA GCAACCGACC ACCTACATCA TCAAGCGCGG GGACACCCTC
TGGGGACTCT CCCAGCGCTT CATGAACGAC CCCTGGTACT GGCCGAACAT GTGGTCGAAA
AACACTGATA TCACCAACCC GCACCTGGTC TACCCCGGCC AGAAGGTCAG GGTATTTCCC
GACCGCCTGG AACTGGTTCC CCGCACAGAG GCCCAGGCCG CGGCAAAACC GGCTGAAAGC
GACGTTGCCG AGGAGCGCAG CTTCACCATC CGGGGCAGCG AGGGGCATCT GCTGGAAAAC
GGCGCCATGC CCTTCGGCTC GGTGGTCGCC ACCCACAATG GCAGGGTCAT TCTCGGTGCG
GACGACATCG CCTACACCGA CATCGGAGCC GCAAACGGCG CCAAGGGGGG AGATACCTTC
TCCATCTTCA GCGACGAAGG TCCGGTCAGC CACCCGGCGA CCAACGAGAT CATGGGCAGG
AAGATCATCC CCTTGGGGAC GCTGCAGCTG ACCGACGTGG AGCAGAAGGC ATCGCGGGCA
ATCATCACCA TGAGCTACAA GGAGATTTCT CCCGGAGCGT TCCTGATACC CTACCGCAGC
GACCGCACCC GCGAGGTATC GCTCAAAATG CCCAGCCGTG AGCTGAGAGG GTATATCATC
GAGAGCCAGA GCGGCACCCA GGGAATCTCC GCCGGCGACA TCGTCTACCT GGATCTGGGC
AGCGCCCGGG GCGCCGAGAA GGGCAACATG CTCTACGTGG TCCGCGACGT CGCCGTGGAC
AGAAGCGTCA CCCAGGGGCG CGTCGATAAC CTGCCCCAGG AACTGCTGGG TGCGCTGGTA
ATCCTGGAGA CCGGCAAAAA GACCGCCACG GCGCTGGTGG TCAAAAGCAT CGACGTCATC
TACATTGGCG ACAAGGTCGT CAGCCAGGCG AAATAG
|
|---|
| Protein sequence | MKTRSVIVFL LALTMLLPGL AAAVEQEQPT TYIIKRGDTL WGLSQRFMND PWYWPNMWSK
NTDITNPHLV YPGQKVRVFP DRLELVPRTE AQAAAKPAES DVAEERSFTI RGSEGHLLEN
GAMPFGSVVA THNGRVILGA DDIAYTDIGA ANGAKGGDTF SIFSDEGPVS HPATNEIMGR
KIIPLGTLQL TDVEQKASRA IITMSYKEIS PGAFLIPYRS DRTREVSLKM PSRELRGYII
ESQSGTQGIS AGDIVYLDLG SARGAEKGNM LYVVRDVAVD RSVTQGRVDN LPQELLGALV
ILETGKKTAT ALVVKSIDVI YIGDKVVSQA K
|
|---|
| |