| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_0499 |
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| Symbol | |
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| ID | 4572923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter propionicus DSM 2379 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008609 |
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| Strand | - |
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| Start bp | 519424 |
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| End bp | 522957 |
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| Gene Length | 3534 bp |
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| Protein Length | 1177 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639754536 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_900188 |
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| Protein GI | 118578938 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.245405 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACAAT CCGACACCCC ATCACGCATA TCCCACACTG CCACGATTCT TGACGCGCTG
GAGCGCGGCA GCAGACACAT CCTCCTGCCC GGCCTGAAGG GCTCCAGCCC GGCCTGCATC
CTGGCCGACA TCCTGGCCCG GTCCACCCGC ACCCTGCTGG TGCTCACCCC CGACCAGGCT
GCCGCCGACG AATTCCTCCG CGAACTGACC TTCTTCGCCT CCCCCAGCCA TGCCCCGCTC
TCCTTTCCGG CCTGGGACAT GGCCCCCTTT TCGGCCACCT CGCCCCATCC GGACATCTCC
GGCGCCAGAC TTGACACGCT CTTCCGCCTG CAGAACGGCC TGGCACGGGC GGTGGTCATG
CCGGTGGCGG CAGCCCTGCA GCGGGTCCTG GGCCGCGGAC TCTTCAGCGA ATCCTCCTGC
TACCTGGTCA GCGGCGAGGA GTTCGAGCGG GACGAACTGC TGGGCAGACT GGTCAAGATG
GGCTACGCCA ACGTCCCCCT GGTGGAGGAC CGCGGCACCT TTGCCGTGCG GGGCGGGATC
CTGGACATCT TCCCCCCCAA CCTCTCCGCT CCGGTGCGCA TCGAGTTCTT CGGCGACACG
GCCGAGACCA TACGCACCTT TGATCCGCTC ACCCAGCGTT CGCTGCACCC CCTGGAAGAA
CTGGTGCTGC TCCCCTCCCG CGAGATCATC CTCACTGACG GGGTGCTGGC CGACATCGCC
CCGCGGCTAA AGGGCTGCTG CGACGACCTG GAGATCCCGG CCAACCGGAG GCGGGAGATC
CTGGAGAACC TGAAGAGCGC CGTCTACTTC CGGGGCGTGG AGTACCTGCA ACCGCTCTTG
CACCCCGGCC TGGAGACCAT CTTCGATTAC GCGCCGGACG CCTCCCTGGC GTTGCTTGAC
CCCCAGGCCA TTCAAGAGGC GATAACGACT TTCGGCAGAG AGCTGGAAGA TGGCGAAGCT
ACAGCCAGGC AAAACGGCCT GCCCCACTCC CCCCGCCAGG AGCTGTACCT GGACGGCGAA
CAGCTGCGGG AGCTGATGGA GAACCGCGGC CGCCTGGAGC TGTCCGGCCT GCTCCTGGAG
GAACCCCAGG GACCCGCAGT GATCACCATC CCCTGCCAGG ACAATACCGA CCTGCGGGTG
ACCGTTTCCA AGGAGACCAC CCAGGCCCTG ACCCCGCTCT CCCGCTCCCT GCGGCAATGG
CTGGACAGCG GCTTCCGTGT CCTGATCGCC TGCCACCAGA ATGCCCAGGC CGAGCGCCTG
AGGGAGCTGC TGACCCCCTA CCGGATCCCC TGCGCCATCA GCGAGGCTTC GTTCGCGGAA
ACGGTACAGG GTGAGGCCCA GGGCGATGCA TCTCCGGATG GCGTCGTCAC CCTCCTGCAA
GGGGACCTGT CCCGGGGCTT CCGCCTGCTG GAGGCCAGGC TGGTCCTGAT CGCCGAGGAG
GAGCTGTTCG GCAAGCGGGT GCGGCGGCGC GGCATCTCCG AGGTGCGCAA GAAGCAGATC
CTGTCATCCC TGGCCGAGCT CAAGCCGGGA GACCACATGG TGCATGTGGA CCACGGCATC
GGCCTGTACC GCGGCCTGCA GCACATCAGC GTCAGCGGCG TCGGCGGCGA TTTCCTGCTG
CTTGAGTACA ACGGGGGCGA CAAGCTGTAC CTGCCGGTGG ACCGCCTGGC CCTGGTTCAG
CGCTATGTGG GGCCGGAGGG GAGCTCCCCC TCCCTGGACA AGCTGGGCGG GGTCTCCTGG
GAAAAATCCA AGGGCAAGGC CAGGAAGGCC ATCGAGGAGC TGGCGGGGGA GCTCTTAGAG
ATCTACGCCA AACGCCAGAT CTGCGAGGGA TTCTCCTTCT CGCCGCCGGA CGAGATGTAC
CGCGAGTTCG AGGCTTCCTT TGCCTGGGAG GAGACGCCGG ACCAGCTCTC GGCCATCAAC
GACGTGCTGG CCGACATGCA GCACTCCCGC CCCATGGACC GGCTGGTGTG CGGCGACGTG
GGCTACGGCA AGACCGAGGT GGCCCTGCGG GGAGCCTTCA AGGCGGCCCT GGACGGCAAG
CAGGTGGGGG TGCTGGTCCC CACCACCATC CTGGCCCAGC AGCACTTCGA GACCTTTCAC
GAACGACTCA AGGAGTACCC GGTCAGGGTG GAGGCGCTCT CCCGCTTCCG GACGCCGAAG
GAGCAGAAGG CCATCCTGGA GCGGCTGAAG AAGGGGGAGA TCGACATCGT CATCGGCACC
CACCGCTTGC TGCAGAAGGA CGTGGCCTTC AAGGACCTGG GGCTCTTGAT CATCGACGAA
GAGCAGCGCT TCGGCGTCAA GGACAAGGAG CGGCTGAAGG CCTTCCGGGC CGTGGTGGAC
GTCATGACCC TGACCGCCAC CCCCATCCCC CGCACCCTGT ACATGTCCAT GATGGGCATC
CGCGACCTCT CCATCATCGA CACCCCTCCG GTGGACCGCC TGGCGGTCAA GACCATCGTG
GCCCGTTTCT CCGAGGAGCT GGTGCGCGAG GCGATCATGC GCGAACTGCG CCGCGGCGGC
CAGGTCTTCT TCGTCCACAA CCGGGTCCAG ACCATCGCCA AACGGGCCGA GCTGATCGCC
GCCTTGGTGC CGGAGGCCAA GATCGCCGTG GGGCATGGCC AGATGGGGGA GCAGGAGCTG
GAAAAGGTCA TGCTCGGCTT CATGCACGGC GAGACCAACC TCCTGATCTG CACCACCATC
ATCGAGTCCG GCCTGGACAT TCCCAACGCC AACACCCTGA TCGTGGACCA CGCCGACAGG
TTCGGCCTCT CCCAGCTCTA CCAGCTGCGG GGGAGGGTGG GACGATCCAG CCAGCGCGGC
TACGCCTACC TGCTGATCCC GGGGGAGGGC TCGCTCACCT CCGACGCCCG GGAACGGCTG
AAGATCCTGC AGGACATCTC CGAACTGGGG GCCGGCTTCC GCATCGCCAC CCACGATATG
GAGATTCGCG GCGCCGGAGA TATGCTGGGG AGCCGCCAGT CCGGCACGGT GATCGAGATC
GGCTTCGAGC TGTACAACCA GATGCTGGAG GAGACCATCT GCCGCATGCG GGGCGAGGAG
ATGATCGAGC AGGTGGAGCC GGAGATCAAC CTGAAGGTGC CGGCCTTCAT CCCCGAGACC
TATGTCAGGG ACACCGGGCA GAGGCTGGTG ATCTACAAGA AGCTGACCCA GGCCGAAAGC
GAGGAGGATG TGCTGGACGT GCAGAACGAG GTGAGCGACC GCTTCGGCAA ATACCCGCTG
GCCACCGCCT ACCTGTTCGA GACCATGAAG CTGCGCATCA TGCTGAAAAA ACTTCTGGTG
CGCCAGATCG ACTACGACGG CAAGGATGTG GTGATCAGCT TCCACCCCCG CACACCGGCA
TCGCCGGATA CGATCATAGC CATGATGAGG AACGAGCCGA AGCGATACCG CTTCACGCCC
GACTACCGCC TGACCTGCGG CGTCAAGGGT ACCGCCTTCG AGGAGATCAT CGATGCGGCC
CGCACGGCGC TGCTACGGCT CCTGCCAACG GAAACAGCAC AGCAGAAGAC GTGA
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| Protein sequence | MTQSDTPSRI SHTATILDAL ERGSRHILLP GLKGSSPACI LADILARSTR TLLVLTPDQA
AADEFLRELT FFASPSHAPL SFPAWDMAPF SATSPHPDIS GARLDTLFRL QNGLARAVVM
PVAAALQRVL GRGLFSESSC YLVSGEEFER DELLGRLVKM GYANVPLVED RGTFAVRGGI
LDIFPPNLSA PVRIEFFGDT AETIRTFDPL TQRSLHPLEE LVLLPSREII LTDGVLADIA
PRLKGCCDDL EIPANRRREI LENLKSAVYF RGVEYLQPLL HPGLETIFDY APDASLALLD
PQAIQEAITT FGRELEDGEA TARQNGLPHS PRQELYLDGE QLRELMENRG RLELSGLLLE
EPQGPAVITI PCQDNTDLRV TVSKETTQAL TPLSRSLRQW LDSGFRVLIA CHQNAQAERL
RELLTPYRIP CAISEASFAE TVQGEAQGDA SPDGVVTLLQ GDLSRGFRLL EARLVLIAEE
ELFGKRVRRR GISEVRKKQI LSSLAELKPG DHMVHVDHGI GLYRGLQHIS VSGVGGDFLL
LEYNGGDKLY LPVDRLALVQ RYVGPEGSSP SLDKLGGVSW EKSKGKARKA IEELAGELLE
IYAKRQICEG FSFSPPDEMY REFEASFAWE ETPDQLSAIN DVLADMQHSR PMDRLVCGDV
GYGKTEVALR GAFKAALDGK QVGVLVPTTI LAQQHFETFH ERLKEYPVRV EALSRFRTPK
EQKAILERLK KGEIDIVIGT HRLLQKDVAF KDLGLLIIDE EQRFGVKDKE RLKAFRAVVD
VMTLTATPIP RTLYMSMMGI RDLSIIDTPP VDRLAVKTIV ARFSEELVRE AIMRELRRGG
QVFFVHNRVQ TIAKRAELIA ALVPEAKIAV GHGQMGEQEL EKVMLGFMHG ETNLLICTTI
IESGLDIPNA NTLIVDHADR FGLSQLYQLR GRVGRSSQRG YAYLLIPGEG SLTSDARERL
KILQDISELG AGFRIATHDM EIRGAGDMLG SRQSGTVIEI GFELYNQMLE ETICRMRGEE
MIEQVEPEIN LKVPAFIPET YVRDTGQRLV IYKKLTQAES EEDVLDVQNE VSDRFGKYPL
ATAYLFETMK LRIMLKKLLV RQIDYDGKDV VISFHPRTPA SPDTIIAMMR NEPKRYRFTP
DYRLTCGVKG TAFEEIIDAA RTALLRLLPT ETAQQKT
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