Gene Ppro_0330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpro_0330 
Symbol 
ID4573096 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter propionicus DSM 2379 
KingdomBacteria 
Replicon accessionNC_008609 
Strand
Start bp329214 
End bp332378 
Gene Length3165 bp 
Protein Length1054 aa 
Translation table11 
GC content62% 
IMG OID639754368 
Producthydrophobe/amphiphile efflux-1 (HAE1) family protein 
Protein accessionYP_900022 
Protein GI118578772 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTCAGT TTTTCATCGA TCGCCCCATC TTCGCCTGGG TGATCGCCAT CATCATCATG 
CTGGCCGGCA TACTGGCCAT CAAGCAGCTC CCCGTTGCCC AGTATCCGGC CATCGCCCCA
CCCCAAGTGT CCATCAACGC CACCTATCCG GGCGCATCGG CCAAAACCAT TGAGGATACG
GTCACCCAGG TCATCGAGCA GAAGATGAAC GGCATCGACA ACCTGACCTA CATGTCCTCC
ACCAGCGATT CAAGCGGCAG TGTCACCATC ACCCTGACCT TCAACGCCGG CACCGACCCG
AACATCGCCC AAGTGCAGGT GCAGAACAAG CTGCAGCTGG CAACGCCGCT CCTGCCCCAG
GCGGTGCAGC AGCAGGGTAT CAAGGTCACC AAGTCAACCA AGAACTTCCT GATGGTGGTC
GGTTTCGTCT CCGAAGACGG CAGCATGACC CGCTTCGATC TGTCCGACTA TGCGGCGGCC
AACGTTTTGG ACATCGTCAG CCGTCTGCCG GGGGTGGGTG AAACCCAGAT GTTCGGCTCC
CAGTACGCCA TGCGCATCTG GCTCGACCCC CACAAGCTGC ATAACTACAA CCTGACCCCG
AATGACGTAA AGAGCGCCAT CAAGGCCCAA AACGTCCAGG TTTCCGCCGG GCAGCTGGGG
GGCAACCCCT CTCCCCAGGG ACAGCAGCTC AACGCCACCA TCACGGCCCA GACCCTGCTC
AAGACCCCGG AGGAGTTCGG AGCCATCATC CTGCGCACCA ACAGCGACGG CTCCAGCGTC
CATCTGCGCG ACGTGGCCCG CAGCGAACTG GGCAGCGAAG ACTACTCTTC CATGGCCCGC
TTCAACGGCA AGCCGGCCGC CGGCATGGCC ATCAAGCTGG CCACCGACGC CAATGCCCTG
GATACCGCTA AAGTAGTCAA GGACAAACTG GCCGAACTGT CCAAGTTCTT CCCCAGCGGC
ATGAAGGTGG TCTACGCCTA CGACACCACC CCATTCGTCA AGATCTCCAT TGAAGAGGTG
GTCAAGACAC TGGGTGAGGC GGTCGTGCTG GTCTTCCTGA TCATGTTCCT GTTCATGCAG
AACATCCGCG CCACCCTGAT CCCCACCATC GCCGTGCCGG TGGTTCTGCT GGGCACCTTC
GGCGTGTTGT CCGCCTGCGG TTTTTCCATC AACACCCTGA CCATGTTCGC AACCGTCCTG
GCCATCGGCC TGCTGGTGGA CGACGCCATC GTGGTGGTGG AGAACGTGGA GCGCATCATG
ACCGAGGAGG GGCTCTCCCC CAAGGAGGCC ACCCGCAAAT CAATGCGTCA GATCACCGGC
GCCTTGGTGG GCATCGCCCT GGTCCTGTCG GCGGTGTTCG TCCCCATGGC CTTCTTCAGC
GGCTCCACCG GCGTGATCTA CCGCCAGTTC TCCATCACCA TCGTCTCGGC CATGGTGCTC
TCCGTACTGG TGGCCATGAC CCTGACCCCG GCCCTCTGCG CAACCCTGCT CAAGCCGGTA
GAGAAGGGGC ATGTGGCGGC TGACAGCGGC TGGTTCTCCG GCTTCTTCCG CTGGTTCAAC
GCATGGTTCG ACCGTGGCAG GGAAAAGTAC GAGGAGATGG TGGGGCGCTC CTTCGGTAAA
CCGGTGCGCT ACCTGGTGGT TTATGGCGCC ATCGTGACCG CCATGGTGCT CTTCTTCCTG
CGCATGCCCA CTGCCTTCCT GCCCGACGAG GACCAGGGCA TGCTCTTCTC CATGGTACAG
CTGCCGGTGG GCGCCACCCA GGAGCGCACC CTGGAGGTGC TCAAGGATGT GGAAAACCAC
TTCCTGGTCG ACCAGAAGGA AGCGGTGGAA TCGCTGTTCA CCGTGGCCGG CTTCAGTTTT
GCCGGCAACG GCCAGAACAT GGGTCTGGCA TTCGTCAAGC TCAAGGACTG GGAGTTGCGC
CAGCGCCCCG ACCTACGGGT CAAGGCGGTG GCCGGCAAGG CCATGGCGGC CTTCTCAGGC
TTCCGCGACG CCCAGGCCTA TGCCTTCGCC CCCCCGGCGG TCATGGAACT GGGCACCTCA
AACGGTTTCG ACTTCCAGCT ACAGGACCGG GGAGGATTGG GGCATGAAAA GCTGATGGAG
GCCAGAAACC AGCTGCTGGG CATGGCGGCC CAGAATCCCA ACCTGATGGC GGTGCGGCCC
AACGGCCAGG ATGACACCCC CCAGTTCAGG CTGGACATCG ATCAGGCCAG GGCCGAGGCC
TACGGCCTCT CCATCTCCGA CATCAACGAC ACCATCTCCA CCGCCTGGGG CAGCTCCTAT
GTCAACGACT TCGTCGACCG GGGCCGCACC AAGAAAGTCT ATATCCAGGG AGACGCACCC
TACCGCATGC TCCCTGAAGA CGTGAACAGA TGGCATGTGC GCAACGCGGC CGGGACCATG
GTCCCCTTCT CGGCCTTTGC CTCGGGTCAC TGGAGCTATG CTTCCCCGCG CCTGGAACGC
TACAACGGAC TCCCCTCCAT GGAGATCCTG GGGCAACCGG CGCCTGGCAA GAGTACCGGT
GTGGCCATGG CCGAGATGGA GAAGATGGCG GAAAAGCTGC CGGCCGGTAT CGGCTTCGAG
TGGACCGGAC TTTCCTACCA GGAACGCCAG GCCGGCGCCC AGGCCCCAGC CCTGTACGCC
ATTTCACTCA TTGTTGTCTT TCTCTGCGTG GCCGCCCTGT ATGAGAGCTG GACCATCCCC
TTCGTCAACA TACTGATGCT GCCGCTGGGT ATCGTCGGGG CCGTCATGGC AACAACCGCA
CGCGGGCTGT CAAACGACAT CTATCTGCAG ATCGGCCTGC TCACCACCAT GGGGCTTTCC
ACAAAAAATG CCATTCTGAT CATCCAATTC ATCAAGGAGC AGATGCATCA GGGGTTGGGG
CTGACCGAGG CCACCCGCGC CGCCGTCAAG ACCCGCCTCC GCCCGGTCAT CATGACCTCG
CTGGCATTCT TTTTCGGCAC ACTGCCGCTG GCCCTCACCA AGGGGGCCGG AGCAGGGGCG
CAGAACGCCA TCGGCACCGC CGTAACCGGA GGGATGCTCT CGGCCACTTT CATCGACCTG
ATCTTCATAC CGTTCTTCTT TGTCCTCGTA TCCCGACTGT TCGGCAGAAA AAACCCGTCA
GCCAACGAAA AGAGCGAACG TATCACCGCA CCGGAGGTCA ACTGA
 
Protein sequence
MAQFFIDRPI FAWVIAIIIM LAGILAIKQL PVAQYPAIAP PQVSINATYP GASAKTIEDT 
VTQVIEQKMN GIDNLTYMSS TSDSSGSVTI TLTFNAGTDP NIAQVQVQNK LQLATPLLPQ
AVQQQGIKVT KSTKNFLMVV GFVSEDGSMT RFDLSDYAAA NVLDIVSRLP GVGETQMFGS
QYAMRIWLDP HKLHNYNLTP NDVKSAIKAQ NVQVSAGQLG GNPSPQGQQL NATITAQTLL
KTPEEFGAII LRTNSDGSSV HLRDVARSEL GSEDYSSMAR FNGKPAAGMA IKLATDANAL
DTAKVVKDKL AELSKFFPSG MKVVYAYDTT PFVKISIEEV VKTLGEAVVL VFLIMFLFMQ
NIRATLIPTI AVPVVLLGTF GVLSACGFSI NTLTMFATVL AIGLLVDDAI VVVENVERIM
TEEGLSPKEA TRKSMRQITG ALVGIALVLS AVFVPMAFFS GSTGVIYRQF SITIVSAMVL
SVLVAMTLTP ALCATLLKPV EKGHVAADSG WFSGFFRWFN AWFDRGREKY EEMVGRSFGK
PVRYLVVYGA IVTAMVLFFL RMPTAFLPDE DQGMLFSMVQ LPVGATQERT LEVLKDVENH
FLVDQKEAVE SLFTVAGFSF AGNGQNMGLA FVKLKDWELR QRPDLRVKAV AGKAMAAFSG
FRDAQAYAFA PPAVMELGTS NGFDFQLQDR GGLGHEKLME ARNQLLGMAA QNPNLMAVRP
NGQDDTPQFR LDIDQARAEA YGLSISDIND TISTAWGSSY VNDFVDRGRT KKVYIQGDAP
YRMLPEDVNR WHVRNAAGTM VPFSAFASGH WSYASPRLER YNGLPSMEIL GQPAPGKSTG
VAMAEMEKMA EKLPAGIGFE WTGLSYQERQ AGAQAPALYA ISLIVVFLCV AALYESWTIP
FVNILMLPLG IVGAVMATTA RGLSNDIYLQ IGLLTTMGLS TKNAILIIQF IKEQMHQGLG
LTEATRAAVK TRLRPVIMTS LAFFFGTLPL ALTKGAGAGA QNAIGTAVTG GMLSATFIDL
IFIPFFFVLV SRLFGRKNPS ANEKSERITA PEVN