Gene Ppro_0054 details

Gene Information

• Locus tag: Ppro_0054
• ID: 4573687
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter propionicus DSM 2379
• Kingdom: Bacteria
• Replicon accession: NC_008609
• Strand: +
• Start bp: 62017
• End bp: 62700
• Gene Length: 684 bp
• Protein Length: 227 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 639754097
• Product: TPR repeat-containing protein
• Protein accession: YP_899752
• Protein GI: 118578502
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3063] Tfp pilus assembly protein PilF

Plasmid Coverage information

• Num covering plasmid clones: 47
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCACA GCGAAACCGA CTTTCAGGGC GGAATCGAGC ATTACAAGCT GGGACTGTTG 
CCCCAGGCAA AGACGCTGCT GAAGAGCTGC GTCACCCGGG ACCCGCGTCA TGCCGAGGCC 
CACAACCTGC TGGGGATCGT CTGCTATCAG CGGGAGGAGT TCGGCGAGTC CCTGGCTTGG 
CTGCGGCGCG CCATCGCCCT GCGGCCCCAC GAACCCAACT ACTGCAACAA CGCCGGGGTG 
ACGGCCCATG CCCTGCGGCT CTACGAAGAG GCGCGCACCT TTTTCCTGCA AGCCATGGAG 
CTGAGCCCTG ATTATCACGA TCCCTACAAC AACCTGGGCA ATCTGCTGCG GGACCTGTTC 
CGTTTTGATG AGGCGGTCCT GCATTTCAAA CAGGCCCTGG CTCTGAAGCC TGATTTCAGC 
GAGGCCTGCT TCAACCTGGC CATGACCCTG GAACAGAAGG GTCACACCAT TGAGGCGATC 
TTCTACCTGC AACAGACCGT GAAGATGGCG CCGGACCACC TCCAGGCCCA CCAGCATCTG 
GCCCGGCTGC TGCCGAAGCA GCGGCGCGGC GACGAGGCCG GCGACCACGC CCGCCAGGCC 
GTATACCTGC AACCGCGTCA GAAAGTCTTC TTCAAAGACA CCCCGGTGTG GTTGGCCCCG 
GACTATCGGG GGCTGTTATC GTGA 

 

Protein sequence

MNHSETDFQG GIEHYKLGLL PQAKTLLKSC VTRDPRHAEA HNLLGIVCYQ REEFGESLAW 
LRRAIALRPH EPNYCNNAGV TAHALRLYEE ARTFFLQAME LSPDYHDPYN NLGNLLRDLF 
RFDEAVLHFK QALALKPDFS EACFNLAMTL EQKGHTIEAI FYLQQTVKMA PDHLQAHQHL 
ARLLPKQRRG DEAGDHARQA VYLQPRQKVF FKDTPVWLAP DYRGLLS