| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_3830 |
|---|
| Symbol | |
|---|
| ID | 4571452 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008608 |
|---|
| Strand | - |
|---|
| Start bp | 5068 |
|---|
| End bp | 6555 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639754016 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_899671 |
|---|
| Protein GI | 118577432 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 149 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCACG CTAAAACATG CCAGCGCCCC ATCAGCCTCG AAAGACGGCT TGCGGCAACT
TACCTAGTAG CTGGTCTGGT CACCGCCGGT CTGGCCGGCT GCGCCGCCGG CCCTGATTTT
CAGCGTCCCA CCGCACCCGA TGTGGCTCGC TACACTGCAA CACCGGTAGC TGATAGAACC
GCGTCCGCTC CCACGCAGTT CGGCGAAACA CAACGTCTAG TCGAAGGGCT TCCGATCGAA
ACGCAATGGT GGCAAAGCTT GGGTTCATCC GCACTCGACG GACTGATCAA CGAAGCTTTC
CATGTCAGCC CGACGCTGGC GAGCATCAGC GCCAATTTGC GACAGGCGCA GGAGCTTCTT
GCCGCACAGG CGGGCTCGAC GCAATATCCA CAGGTAGATG TCGCACTGGG ATCTCAGCGC
CAGCAAATGA GTCCCAGTAG CCAAGGGTTG AGCGGAGACG CACGTCAATT CAGCCTCTAC
AACGCCAGCG TTGGCGTGCA TTACAACCTC GATCTGGCTG GCGGCAACCG GCGCGCACTC
GAAGCCTTGG CTGCTCGCGC CGACTACCGT CGCTTCGAAC TGAATGCTGC GCGCCTGGCC
CTTGCCGGCA ATATGGCAAC CGCTGCCATT ACCCGAGCAC GCCTCGCCGC GCAACTAGAA
GCCACTACTG CCATTTTGCG CGTGCAGGAT GAGCAACTGC GCCTAGCCCA TGAACGCGTG
CGTATCGGTC AGGCCTCACC TGATGAAGCG TTAAGCCTAC AAGCTCAGGC GGAGCAAACG
CGGGCAGAAC TGCCTGCGCT GCGTAAACAA CTGCAACAAA CCGAACATCT ACTGGCGGTG
CTAGCCGGTC GTGCCCCAGG CACGGGTGGC ATCCCGGCCT TCACTCTGGC CGATTTCACT
CTGCCCGTCG AGATGCCGCT CGTCGTGCCC TCAGAACTGG TGCGCCGCCG ACCGGATATC
CAGGCGTCAG AGGCGCTGTT GCATGCGGCC AATGCAGACT ATGGTGTGGC TATCGCCAAG
CTCTACCCAC AGATCAACCT GAGCGCCAAC CTTGGCTCTC AAGCGCTGAC CACCGGTGCC
CTGTTCGGTG GTGGCTCGGC AGTGTGGGGC CTGGTTGCGC AGCTCACCCA ACCTCTTTTT
AATCCAGGGC TACCCGCTGA AAAAAGAGCG GCGCTCGCCG CTTTTGATGC CGCCGCAGCC
AATTACCAGA GCGTCGTGTT GGAGTCTTTG CGTAACGTCG CCGACACCCT GCGCGCGGTG
GAAAGCGATG CACAAACTTT GACTGCCCTC GCTGCCGCTG ATATGGCTGC ACAGGCCTCC
TTGCAGTCGG TCGAGCGGCA ATACCGGCTG GGCGCGGCCA GCTACCTGCA ACTGCTCATC
GCGCAGCAAC AGGCACAGTC AATCCGGATC AATATGGTTG CGGCCCAGGC ACAACGCCTA
GTCGATAGTG TTGCTTTATA TCAGGCCCTG GGAGGTGGTG TCAGTTAA
|
|---|
| Protein sequence | MEHAKTCQRP ISLERRLAAT YLVAGLVTAG LAGCAAGPDF QRPTAPDVAR YTATPVADRT
ASAPTQFGET QRLVEGLPIE TQWWQSLGSS ALDGLINEAF HVSPTLASIS ANLRQAQELL
AAQAGSTQYP QVDVALGSQR QQMSPSSQGL SGDARQFSLY NASVGVHYNL DLAGGNRRAL
EALAARADYR RFELNAARLA LAGNMATAAI TRARLAAQLE ATTAILRVQD EQLRLAHERV
RIGQASPDEA LSLQAQAEQT RAELPALRKQ LQQTEHLLAV LAGRAPGTGG IPAFTLADFT
LPVEMPLVVP SELVRRRPDI QASEALLHAA NADYGVAIAK LYPQINLSAN LGSQALTTGA
LFGGGSAVWG LVAQLTQPLF NPGLPAEKRA ALAAFDAAAA NYQSVVLESL RNVADTLRAV
ESDAQTLTAL AAADMAAQAS LQSVERQYRL GAASYLQLLI AQQQAQSIRI NMVAAQAQRL
VDSVALYQAL GGGVS
|
|---|
| |