| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_3798 |
|---|
| Symbol | |
|---|
| ID | 4571433 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008607 |
|---|
| Strand | + |
|---|
| Start bp | 173408 |
|---|
| End bp | 174820 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639753984 |
|---|
| Product | TraG family protein |
|---|
| Protein accession | YP_899639 |
|---|
| Protein GI | 118577399 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTCGGAT TCTTAAAACC CAAATATAAC AACAGCAGCA CTGCAAATAA AAGGGCAGGG
GAACTACTGA TCGGGCAAGG TGTCAACCTG GACAACCCAA CAGTCCTCCA ACCCATCTAC
GTGAGCGAAG AACATCGCCG GCGCGGAATG ATGGTGGTCG GCACAACCGG TGTCGGCAAA
ACGAGACTGG AAGAGAATTT CATCGAGGAC GATATCCTGA CAGGTAAATC CGTTGTGTGT
ATCGATCCAA AAGGCGATCA AAGTCTGTTC GCGAAAATAT ACGACGTGGC TCGAAGAGCG
AAGCGTCTTG ATGAGATCCA GCTGGTCACT GTCATCTATC CTGAACATTC AGCTGTTATC
GATCCCATGG CCTACTACTT CATGGTGGAT GAGCTCGTGG GACACATCGT TGCCGCAATA
CCTCCGTCCA AGGAAGAGTT TTTCCGGCAA CTGGCCACCG CGATTTCCAC CGTCGCCATC
ACCGCAAACA TCATAATCGC CAACCACAGC GGTACTGTCC CAAACCAGAA CCTTGACCAC
CTCAGGCAGT GTGTTCGGAG ACAGAGCCTG GAAGAGACAA AGAACACTCT GCTTGGCATC
GGTACGACCG AAGCGACTCG GATTGCAAGC ATGATTGACG ACCTCATGTG CAGCGACCAG
GAACACTTCG CTAAAGTATC AATGTCTTTG TCGACCACAC TCATGACTCT CAGCAGTGGG
AATATCGGGA AAATCATCGG GCAAGCCGAT TCGAATCGGT TCATGAAGCG ACTAGAGCAA
GGGAAGCGAG TAATCCTGGT GGTCCACACC GGGGCCCTCA TGGTTCGGTC CGCGTCATCT
GTGTTGGGCC GCTTGCTGAT CTCCATGATA CAGGGGCTTA TCGGCCGGAC ATACAACTCA
AGCAAACAGA AGCTTGATAT CCCTCTGTCG ATTCACATCG ACGAAGCCCA CAACGTCCTT
TATGACGGCT TTGAGAATCT AACCGCAATG GCCGGCTCCG CGAACGTCAT GACTACTCTG
TACATTCAGG ACATAGCCCA ACTCAAGGCC GCCATGAAAA GCGAGGACCT CGCCCAGGTG
GTTCTCAATA CATGCAACAC AAAAATATTC TTGCGGTGTC CTGATGCAGT GACCAGTGAA
TATGTGGTTA AGCATTTCGG AACTCGCAAC GTCCTGAGCG GCATCTACGG GACCAATCAG
GTCACTACAC GTGAAATTGA GCAAGAAGCC GTAAAGACCT ACGAAGTGTT GTCGCTCCAA
CCCCGCGAAT TCCTCATGAC CTCATACAGC GGGCGTTTTA AGGGAACAAC TGCTGAAATA
TCCGAATCAC GACTCAAAAT CATCTTCCCC TCTGCACCCG GTGATCTTTC CCAGGCACAG
GAAGAGGAGA GGGAAGAGGA AGAGATCATC TGA
|
|---|
| Protein sequence | MFGFLKPKYN NSSTANKRAG ELLIGQGVNL DNPTVLQPIY VSEEHRRRGM MVVGTTGVGK
TRLEENFIED DILTGKSVVC IDPKGDQSLF AKIYDVARRA KRLDEIQLVT VIYPEHSAVI
DPMAYYFMVD ELVGHIVAAI PPSKEEFFRQ LATAISTVAI TANIIIANHS GTVPNQNLDH
LRQCVRRQSL EETKNTLLGI GTTEATRIAS MIDDLMCSDQ EHFAKVSMSL STTLMTLSSG
NIGKIIGQAD SNRFMKRLEQ GKRVILVVHT GALMVRSASS VLGRLLISMI QGLIGRTYNS
SKQKLDIPLS IHIDEAHNVL YDGFENLTAM AGSANVMTTL YIQDIAQLKA AMKSEDLAQV
VLNTCNTKIF LRCPDAVTSE YVVKHFGTRN VLSGIYGTNQ VTTREIEQEA VKTYEVLSLQ
PREFLMTSYS GRFKGTTAEI SESRLKIIFP SAPGDLSQAQ EEEREEEEII
|
|---|
| |