Gene CFF8240_1112 details

Gene Information

• Locus tag: CFF8240_1112
• Symbol: ligA
• ID: 4539560
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter fetus subsp. fetus 82-40
• Kingdom: Bacteria
• Replicon accession: NC_008599
• Strand: -
• Start bp: 1105792
• End bp: 1107729
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 639746482
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_892270
• Protein GI: 118474676
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.00321747
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATAAAA ATGATTATTT AAAAGCAGTC GATAGTTTAA ATTTATGGGC AAAGGCTTAT 
TATACCGATG ATTCTCCGAT GGCGTCAGAT GATGAGTATG ACAAGCTTTA TAACGCCGTA 
GTTCAGTTTG AAAAAGAAAA TCCGGATTTA AAACTCTCTT ACTCTCCTAC AAATAGAATC 
GGTGGAGAGA TTTTAGATGA GTTTAAGAAG ATATCTCATA TAGAAAAAAT GTGGTCCATG 
GAGGATATAT TTAGTGATAG CGAGCTTGTT GCTTGGATTT CTAGAGGAGA TAAAACGGAT 
TGCGAGTTTT TTGCCGAACC TAAATTTGAT GGAGCTAGTT TAAATTTACT TTATGAAAAC 
GGAAATCTTA TAAGCGCTGC TACAAGAGGC GATGGAAGCG TTGGAGAAGA CGTCACGAAC 
AATGCAAAGG TCATAAGCTC AGTACCGTTG CAAATAGACT ATAAAGATAA AATAGAAATA 
AGAGGCGAAG TCGTCATAAC AAAAGATGAT TTTGAATTGA TAAATATTGA GCGTAGCAAA 
AATTCAGAAC CGCCTTTAGC AAATCCGAGA AACGCAGCAG CCGGAAGCCT TAGACAGCTT 
GATAATGGTA TAGTAAAACA GAGAAAACTT AAGTTTTATC CATGGGGAGT CGGAGAGAAC 
TCTTTGAAAT TTAATAAACA TTCTCAGATT ATGGATTTTG TAAGAAGTCT TGGTTTTTTA 
CATGATAATT TTTGTAAAGT GATCAGAGGT ATCGACGAGT TAAAAATTGC TTATAAAGAG 
CTTTTAAGCG TAAGAGAGCT TAAGCCTATT TTGATGGACG GAATGGTAAT ACGAGTAAAT 
GATTTATCAA AAGCTAATCA ACTTGGTTAT ACCGTTAAAT TTCCAAAATT TATGGTAGCT 
TATAAATTTC CTGCCACTGA AAAAACTGCA AGATTGATAG ATATATTGCT GCAAGTAGGA 
AGAACAGGAG TCGTAACTCC AGTGGGATTG CTTGATGGAG TTTTGATAGA CGGTGCGTTT 
ATAAAAAATG TCACGCTTCA TAATTTTGAT GAGATAGATA GATTAAATTT AATGAAAAAT 
GACTTTGTTA CCGTGATAAG AAGCGGAGAT GTCATACCTA AGATTACTGG AGTATTTAAA 
GATAGAAGAG ACGGTAGTCA AAGTGAGATA ATTCGCCCGA AAATTTGCCC TAAATGCGGA 
AACGAGCTTT TAGACGAAGG TGTTTTTATA AAGTGTCAAA ATCTAACTTG CAAAGCTAGA 
GTCGTGAGTT CTATTATCTA TTTCGCATCT AAAAAATGTA TGAATATAGA CGGTCTTGGT 
GATGCTATAG TAGAGCTTTT ATATCAAAAA AATATTATTA AAGATATCGC TGATATTTAT 
AGGCTTGATG AGCTTAGTTT TATAGGTCTT GAGGGATTTA AAACTAAAAA AATTTCAAAT 
TTATTATCGG CTATTAATAA CTCTAAAACT CCAAATTTAG ATAAATTTAT AGCGTCTTTA 
GGCATCGAAC ATATAGGCGA AGTTGCCGCT AAAAAAATAG CAAATAATTA TGGAGATAGG 
TGGCTTGAAT TAACTCTTGA AGAGCTTTTA GCTTTAGACG GATTTGGTGA AGCTATGGCT 
CTTAGTTATC TTGAGTTTAT GAGAGTAAAT TTAGAAAAAA TAAAAGAACT TTTAGAATTT 
ATCACTCCAA AAATGCAAAA TTTAGAGTTA AAAACAAATA TATTTTCAGG AAAAACAGTA 
GTTATAACAG GTACTTTGTC TCGCTCTAGA GATGAGTTCA AAGCAGAACT AGAAAGTTAT 
GGTGCTAAAG TATCTAGCTC GGTGTCTAAA AAAACGGATT TCGTATTATA TGGAAATGAA 
GCCGGAAGTA AGCTAGAAAA AGCAAATGAA TTAGGCGTAA GAGCAATAGA TGAGAGTGAG 
TATGAAAGTT TAAAATGA 

 

Protein sequence

MDKNDYLKAV DSLNLWAKAY YTDDSPMASD DEYDKLYNAV VQFEKENPDL KLSYSPTNRI 
GGEILDEFKK ISHIEKMWSM EDIFSDSELV AWISRGDKTD CEFFAEPKFD GASLNLLYEN 
GNLISAATRG DGSVGEDVTN NAKVISSVPL QIDYKDKIEI RGEVVITKDD FELINIERSK 
NSEPPLANPR NAAAGSLRQL DNGIVKQRKL KFYPWGVGEN SLKFNKHSQI MDFVRSLGFL 
HDNFCKVIRG IDELKIAYKE LLSVRELKPI LMDGMVIRVN DLSKANQLGY TVKFPKFMVA 
YKFPATEKTA RLIDILLQVG RTGVVTPVGL LDGVLIDGAF IKNVTLHNFD EIDRLNLMKN 
DFVTVIRSGD VIPKITGVFK DRRDGSQSEI IRPKICPKCG NELLDEGVFI KCQNLTCKAR 
VVSSIIYFAS KKCMNIDGLG DAIVELLYQK NIIKDIADIY RLDELSFIGL EGFKTKKISN 
LLSAINNSKT PNLDKFIASL GIEHIGEVAA KKIANNYGDR WLELTLEELL ALDGFGEAMA 
LSYLEFMRVN LEKIKELLEF ITPKMQNLEL KTNIFSGKTV VITGTLSRSR DEFKAELESY 
GAKVSSSVSK KTDFVLYGNE AGSKLEKANE LGVRAIDESE YESLK