| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CFF8240_1085 |
|---|
| Symbol | |
|---|
| ID | 4538248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter fetus subsp. fetus 82-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008599 |
|---|
| Strand | + |
|---|
| Start bp | 1082891 |
|---|
| End bp | 1083850 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 639746458 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | YP_892246 |
|---|
| Protein GI | 118475203 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.000216184 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTTT TGCTTATAAA TGGTGCTATA ACATTTGCAA TATCCATAAT AATCTATGAT
GAATTATATG AAGAAAAATA CCAATCACTG ATAAATATCT GGATACAACT AAGCGGTACT
TATAATATAG TTTGCGATAT AATAGTCATG GGCTGGGGAT ATGGATTTGA ACTATTTTTA
GTCGGTCTAA TCGCGATATA CTACTCATCT GCTATAAAAA ATAGTTATTT TAAAATCATA
ATTGTAGTAG CACAATCCAT AACTTATCTT GTTTTACACT ATCTATTTGC TCATCAAGAT
ATAAACTACG GAAATGATGA TTTAAAACAT ATATCATATA TATCTGGATT TTTAGCAATC
GTATTTGTAT TCTTCTTTTT ACATCAAAAT TTAAATATAG TAGGCGCGGT AGATATCTTA
AATTTACAAA GAAAGAAAAA AGATTATCAG CGTATAGCAG AACATGACTT TTTAACAGGA
TTTTATACTA GGGCTCCTAT GCGTCAGATG CTAACTAGTC GTTTAAGTAT GCTAAAAAAC
GAAGAGTTAA AATCCATATG TATAATCCTA TGCGACCTTG ATAATTTTAA AAATATAAAC
GATACGTTGG GGCATATTTT TGGTGATACT ATACTAAGCA GAGTCGCAGC TTCTTTAAAA
AGCAGCTTTA TAAAATACGG CAAACTTTGC AGATGGGGCG GAGAGGAATT TTTAATAATT
TTAGAAAATA AAAATGCTAC GGATATAAAA GACATCATAG AATCAGCAAG ACTAAAAGTA
GAAAAATTAA ATCCGGAAGG AATAAAAGTA AGCGTAACAT TTGGGGCGCT CTATCTCACC
AAAATCGAAG CAGACTTTGA GCTAGAACCG GCTATTAGCA TTGTCGATGA GCTTATGTAT
TATGGAAAAA GTCAAGGAAA AAATAGACTG GTATTTAAAA ATTATGAATA TAAAAAGTGA
|
|---|
| Protein sequence | MSFLLINGAI TFAISIIIYD ELYEEKYQSL INIWIQLSGT YNIVCDIIVM GWGYGFELFL
VGLIAIYYSS AIKNSYFKII IVVAQSITYL VLHYLFAHQD INYGNDDLKH ISYISGFLAI
VFVFFFLHQN LNIVGAVDIL NLQRKKKDYQ RIAEHDFLTG FYTRAPMRQM LTSRLSMLKN
EELKSICIIL CDLDNFKNIN DTLGHIFGDT ILSRVAASLK SSFIKYGKLC RWGGEEFLII
LENKNATDIK DIIESARLKV EKLNPEGIKV SVTFGALYLT KIEADFELEP AISIVDELMY
YGKSQGKNRL VFKNYEYKK
|
|---|
| |