Gene CFF8240_0895 details

Gene Information

• Locus tag: CFF8240_0895
• Symbol: speA
• ID: 4538020
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter fetus subsp. fetus 82-40
• Kingdom: Bacteria
• Replicon accession: NC_008599
• Strand: +
• Start bp: 899815
• End bp: 901656
• Gene Length: 1842 bp
• Protein Length: 613 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 639746278
• Product: arginine decarboxylase
• Protein accession: YP_892067
• Protein GI: 118474532
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1166] Arginine decarboxylase (spermidine biosynthesis)
• TIGRFAM ID: [TIGR01273] arginine decarboxylase, biosynthetic

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.262836
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAAATG ATTATGGACT TAGTTTATGG GGAGACTCAA ATTTCATCAT AGATAGCGGA 
AAAGTATGCC TAAACACTGA TTTTAAACCT GCCATAATCG ATATAGTAAA AGATATAAGA 
GATGATGGAT ATAGAGGTCC TTTATTACTT AGATTTCCTC ATCTTATTAA AAAACAGATT 
GTTCAAGTTT ATTCTAGTTT CGACAGAGCC AAAAAAGAGT TTGAGTACTC AGGAAGCTTC 
AACGCCGTTT ATCCGCTGAA AGTAAATCAA TACCCAGGTT TCGTGGAAAA TCTAGTAAAA 
TTAGGCGAGT CATATGGATA CGGTTTGGAA GCCGGAAGTA AAGCAGAGCT TTTGCTAGCT 
ATGGCTTACA ATAACTACGG AGCTCCTATT ACCGTAAATG GATTTAAAGA TAAAGAGCTT 
ATAGATATAG GATTTATCGC TGCTGAAATG GGGCATAACA TCACTCTTAC CATAGAAGGA 
CTAAATGAGC TTGAAGCTAT AATCGCAACG GCAAAAGAGA GATTTACTCC AAAACCAAGC 
ATAGGGCTTC GCATAAGACT TCATAGCAGC GGAACTGGTG TTTGGGCAAA AAGCGGCGGT 
ATAAACTCCA AATTTGGATT AACTTCAACA GAGCTCATTG AAGCCGTGAA TTTGTTAAAA 
GACAACGAAC TTATAGAGCA ATTTACAATG ATACATTTTC ATATCGGAAG TCAGATAAAC 
GAAATTCATC CTCTTAAAAA AGCTCTTGTA GAAGCTGGTA ATATATATGC AGAGCTTAGA 
AAAATGGGAG CTTCAAATTT AAAAGCTATA AATTTAGGCG GCGGTTTAGC TATAGAATAT 
TCCCAATTTA AAGAGCATCC TAGCAGAAAC TATACACTAA AAGAGTATGC AAACGACGTT 
GTTTATCTGC TAAAAACAAT AGCAAATCAA AAAAACGAAA TCGAACCGGA TATTTTTATA 
GAAAGCGGTA GATATATAGC TGCAAATCAC GCTGTTTTGG TTGCTCCCGT GCTTGAGTTA 
TTTAGTCAAG AATACACAGA AGAAAAACTA GTACTAAAAA AGAATAACCC TCCTCTTATA 
AGCGAGCTTT ACGATCTTTA TACTAGTATA AAACCTAGCA ATGCTATAGA GTATCTTCAT 
GATAGCATTG CTCATATGGA AAGCGTTTTG ACGCTATTTG ACCTTGGTTA TGTAGATTTG 
CATGATCGCT CGAATTCAGA GATTTTAGTT CACCTAATTA TGAAAAAAGC TATTTCCATG 
CTTGGTAACA AACAAAATTA CGCAGAACTT CTTAAAATTC AAGAAGAAGT TCAAGAAAGA 
TACTTAGTGA ATTTCTCTAT GTTTCAAAGT TTGCCTGATT TTTGGGGTCT TGGACAGAAC 
TTCCCTGTAA TGCCTCTTGA TAGACTTGAT GAGCGCCCTA CTTTATCTGC GTCTATTTGG 
GATATCACTT GTGATAGCGA TGGAGAGATA AGCTTTGATG CAAATAAAAA TCCGCTATTT 
TTACACGATG TAGATGTAGA AAAAGAGCAG TATTTCTTAG GATTTTTCTT AGTTGGAGCA 
TATCAAGAGG TGCTTGGTAT GAAACATAAT CTTTTTACCC ACCCGACGGA AGCGACTGTA 
TTTTTAAATG ATAGCGGTAG TTATGAGATT AAAAATATAC TTGAATCTCA GTCTATCATG 
GATATTTTGG AAGATTTGGA TTATGATATA CATGCTATTA GAGATATTCT AAATGAAAGA 
ATAGAAAACT CTACGCTAGT TGATGAAAAA CAGAAAAAAC ATATTTTAGG GGAATTATAT 
CTGTTTTTAA ATGACAATGG CTACTTAAAA ACTATAGGAT AA 

 

Protein sequence

MTNDYGLSLW GDSNFIIDSG KVCLNTDFKP AIIDIVKDIR DDGYRGPLLL RFPHLIKKQI 
VQVYSSFDRA KKEFEYSGSF NAVYPLKVNQ YPGFVENLVK LGESYGYGLE AGSKAELLLA 
MAYNNYGAPI TVNGFKDKEL IDIGFIAAEM GHNITLTIEG LNELEAIIAT AKERFTPKPS 
IGLRIRLHSS GTGVWAKSGG INSKFGLTST ELIEAVNLLK DNELIEQFTM IHFHIGSQIN 
EIHPLKKALV EAGNIYAELR KMGASNLKAI NLGGGLAIEY SQFKEHPSRN YTLKEYANDV 
VYLLKTIANQ KNEIEPDIFI ESGRYIAANH AVLVAPVLEL FSQEYTEEKL VLKKNNPPLI 
SELYDLYTSI KPSNAIEYLH DSIAHMESVL TLFDLGYVDL HDRSNSEILV HLIMKKAISM 
LGNKQNYAEL LKIQEEVQER YLVNFSMFQS LPDFWGLGQN FPVMPLDRLD ERPTLSASIW 
DITCDSDGEI SFDANKNPLF LHDVDVEKEQ YFLGFFLVGA YQEVLGMKHN LFTHPTEATV 
FLNDSGSYEI KNILESQSIM DILEDLDYDI HAIRDILNER IENSTLVDEK QKKHILGELY 
LFLNDNGYLK TIG