| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acel_1959 |
|---|
| Symbol | |
|---|
| ID | 4484929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidothermus cellulolyticus 11B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008578 |
|---|
| Strand | + |
|---|
| Start bp | 2224838 |
|---|
| End bp | 2226292 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639730751 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_873717 |
|---|
| Protein GI | 117929166 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.979319 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGAT TCGTGGCGGA ATTGTTCGTG GAGCCGCGCC GGCCGCCGGC AATCCGGGAT
CATCCGCGGG CACCCTGGCT CGTCGTCGCG ACGGTCTGTG TCGGCGCCTT CATGGGCCAG
CTGGACGCGA GCATCGTGAC GCTTGCTTTT CCCACTCTTG AACGTGATTT CGCCGCCAGC
GTGGCCTCCG TGGAGTGGGT GGCACTGGCA TACCTCGTCG TTCTGGCCGG CACGCTCACC
GCCGTCGGAC ATTTCGCCGA CATGGTCGGC CGGAAATTGC TGTACACCTA TGGATTTATC
GTCTTCGCGG CGGCATCGGT GGCGTGCGGT CTGGCGCCGA ATCTCGGCAG TCTCGTCGCG
TTCCGTGCCG TGCAGGCGCT CGGGGCGGCC ATGCTGCAGG CGAATTCGGT CGCACTCATT
GCCACCGCGT TGCCGCGGGA CGCGGTGGGT GCGGGTCTCG GCGCGCAAGG CGCGGCACAG
GCGCTTGGAC TCGCGCTCGG GCCGACCGTC GGCGGTGTGC TCATCGACAC GCTCGGCTGG
CGATGGATCT TCTTCGTCAA CGGGCCGGTC GGGCTGCTCG GCGTGCTGGC CGGCTGGTTC
TTCCTTCCCC GCTCACGAGA CCTGGCAGCC CGCGCGCCCT TCGATTGGAC GGGGTTGGTA
CTCCTCCTGC CTGCCATCGG TCTTGGGCTG ATCGGACTTT CGGCTGGCCA GCACTCCGGT
TACATGACCC CCGGTGTTCT CGCCGAATTC GTGGTCAGCG CGTTCCTGCT GGGCGGCTTC
ATCCGGCACG AGCGACGCTG CGACCACCCA CTTCTTGAGC CGCGGCTCTT CGCTGACCGC
GTTTTCAGCA GCGGCATCGT GGCGGGTCTT CTCGCGTTCC TCGTGCTGTT CGGCACGCTG
TTCGTCGTGC CGTTCTTTCT TGAGAACGGG CACGGCGTTG CGCCGGCCCG CACAGGGCTC
ATCGTCAGCG CCCTGCCGGC TGCGTTGGGA CTCATCGCAC CCTGGGCCGG ACGCCGCGCG
GCGCGACCGT GGGCGTTCCT CCTCTCCGCA GCCGGCCTCA CCCTTGTCGG CGCCGCCCTG
CTGGCTGCGG GTTTCGTCAG CCGGGGAATC GCCGTGGTCG TTGTCATTCT GGCCGCCGTC
GGCCTGGGCT TGGGTGCCTT CAACCCGCCG AACAATACGG CAATCATGAC CAGTGTGCCG
CGGCAGAGAT CCGGGCAGGC GGCGGGAATT CTCAACACCA CCAGGGCGTT AGGGTCCGCG
CTCGGTATCG CGGTCGCCGG TGGAGCATTT GACGCCGCAC GACACGGATA CACGCACCCG
ACTCTCGGTG TCACTGCGGG ATTCCGCGCC GCGGTCATCA CGCTCAGCGG TTTCGCTCTC
GCCGCGGCCG CGTTGACGCT CGTCAGAGGC GCAAAAAGGC GGCCCTCCGT AACGGCCGCC
ATGAACCATC AATGA
|
|---|
| Protein sequence | MRRFVAELFV EPRRPPAIRD HPRAPWLVVA TVCVGAFMGQ LDASIVTLAF PTLERDFAAS
VASVEWVALA YLVVLAGTLT AVGHFADMVG RKLLYTYGFI VFAAASVACG LAPNLGSLVA
FRAVQALGAA MLQANSVALI ATALPRDAVG AGLGAQGAAQ ALGLALGPTV GGVLIDTLGW
RWIFFVNGPV GLLGVLAGWF FLPRSRDLAA RAPFDWTGLV LLLPAIGLGL IGLSAGQHSG
YMTPGVLAEF VVSAFLLGGF IRHERRCDHP LLEPRLFADR VFSSGIVAGL LAFLVLFGTL
FVVPFFLENG HGVAPARTGL IVSALPAALG LIAPWAGRRA ARPWAFLLSA AGLTLVGAAL
LAAGFVSRGI AVVVVILAAV GLGLGAFNPP NNTAIMTSVP RQRSGQAAGI LNTTRALGSA
LGIAVAGGAF DAARHGYTHP TLGVTAGFRA AVITLSGFAL AAAALTLVRG AKRRPSVTAA
MNHQ
|
|---|
| |