| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acel_0620 |
|---|
| Symbol | |
|---|
| ID | 4486402 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidothermus cellulolyticus 11B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008578 |
|---|
| Strand | - |
|---|
| Start bp | 670521 |
|---|
| End bp | 672074 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639729387 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_872379 |
|---|
| Protein GI | 117927828 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0089586 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGAA CACAGGACAT CGACTTGGTG CCGCTCAGCG AACGGCTCCG GACTACCCAG
CTGTGTCGGT ATGGCCTCGG TGTGGTGATG GTGCTGCTGT GGTACGCCGT CCCGCAATAT
CGAGGCCTGC CGCTTGTCTC GCTCGCGGGA TTCACGGCCG GATATCTCGC GGTGACAGCG
CCGACCGCGT ACGCCGCACG ACTGTCACGG CGAACGATAC TCACGGTCTT CAGCGCGTCG
CTCGTCATCG ACGGGATATA TCTGGCGATC ACCAGCTATG CCACAACCGG ATACGTGTCT
CCCCAGGTCA CCCTCGTTCT GGTGCACGCC GTAACGGTTA CGCTGCTGGC ATCCTTTCGC
ACCGGCTTGA AAATCGCGGT CTGGCATTCC CTGCTTGCCT TCGTCGTCTA TCAATACCTG
AGGGCGGGGG TGCTCCATTC TCCGCACCAC TCGACCGGGG CGGAGGTGGG CGCTTTCGTC
GCCGCGGTAT GGCTGGTCAC GCTGGCGACC GCCGCGTTCG CCTCCGTGAA CGAACGCGAG
TTGCGCCGCC GCAACTACGA TCTTCTTGGG CTGGCTCGAC TTTCTCAGCG CTTGGAGGAA
GCTCTCCATC CCGCCGACGT CGGTCGCGTG CTTGTCGAAG CGGTGCACGA CGACTTTCTC
GCACCTCGAG CGGCAATCGT CGTCAAGAGC GGCCCGGGCG ACGTCATCCT GGCCTCGGTC
AAGACGACAC CGAACCGACT GTCACCCGCG GAAGACCGCT CTATTCAATC GGTTCGCCGC
GAACGGCGGA CGTGGCGGCT GGGGCATATC GACCGACACC GGGATCGATG GCTTGCGGCC
AGCTTTCCCG GGGCCCAGCG CCTCCTCCTC GTCCCCATGT CAGCCGGCAA CAACGTGGAC
GGCGTACTGG TGGCCGAGCA CAATGCCCGT TTCGGTTCGC GGGTTGACCG GCGCGTCGTC
GCAATGCTGG AACGTTACGC GTCGCAAACA GCGCTCGCGC TGGCCAACAG CTGGCTGCTC
GAGCAGATCA CATTGCTTGC CGCGACTGAC ATGCTCACCG GAGTAGCGAA TCGGCGTACT
CTCGAAGAGA ATCTCGACCG GATGTTCGCT CAAGCGAGTC GGGCGGCACA ACCGATATCC
GTCGTCATGG TCGACATCGA CCATTTCAAG CACATCAATG ACACGTTCGG ACATCAAGTC
GGCGACCAGA CGCTCCAGCG GGTTGCCCGC GCACTCCAGC AGGGGTGCCG GAGCTCTGAC
CTCGTCGCCC GGTACGGCGG GGAGGAATTC GTCGTTGTGC TGCCGGACAC CGATCTCGCC
GGCGCTGCCA CCGCAGCGGA GAATCTTCGC CGCCGAATTT TCGGTCTTGA CGCCGAACCG
CGCGTTACGG TGAGCCTCGG GGTCGCGACC TTCCCCCTGC ATGGCGGATC ACCGGATCAC
ATTCTTTCGG CTGCCGACGC CGCCCTCTAT CAATCGAAAT CAGCCGGCCG CAACCGGGTC
ACTCTCGCGG GAGTGGGGAG CCAGGTCCTG CCTGGCTCCC CACAACCCGC ATAG
|
|---|
| Protein sequence | MARTQDIDLV PLSERLRTTQ LCRYGLGVVM VLLWYAVPQY RGLPLVSLAG FTAGYLAVTA
PTAYAARLSR RTILTVFSAS LVIDGIYLAI TSYATTGYVS PQVTLVLVHA VTVTLLASFR
TGLKIAVWHS LLAFVVYQYL RAGVLHSPHH STGAEVGAFV AAVWLVTLAT AAFASVNERE
LRRRNYDLLG LARLSQRLEE ALHPADVGRV LVEAVHDDFL APRAAIVVKS GPGDVILASV
KTTPNRLSPA EDRSIQSVRR ERRTWRLGHI DRHRDRWLAA SFPGAQRLLL VPMSAGNNVD
GVLVAEHNAR FGSRVDRRVV AMLERYASQT ALALANSWLL EQITLLAATD MLTGVANRRT
LEENLDRMFA QASRAAQPIS VVMVDIDHFK HINDTFGHQV GDQTLQRVAR ALQQGCRSSD
LVARYGGEEF VVVLPDTDLA GAATAAENLR RRIFGLDAEP RVTVSLGVAT FPLHGGSPDH
ILSAADAALY QSKSAGRNRV TLAGVGSQVL PGSPQPA
|
|---|
| |