Gene Acel_0379 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAcel_0379 
Symbol 
ID4485790 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidothermus cellulolyticus 11B 
KingdomBacteria 
Replicon accessionNC_008578 
Strand
Start bp392345 
End bp392992 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content69% 
IMG OID639729146 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_872139 
Protein GI117927588 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACAAC CGATGCCCGA TCCGTCATTC GCCGCGTTGC TCCAGGCCGC CCAGGCTGGG 
GAAGAAGACG CCTTCGCGAC GCTGTGGCGC GACGTTCACC CGGCGCTCCT GCGCTACCTC
CGCGTCATCG CCGGCGATGC GGCCGAGGAT CTCGCATCGG AAACCTGGCT GCACGTCATT
CGCGGTCTTG ATCGCTTCCG TGGCGACGAG GCGGGTTTCC GTGGCTGGGT GTTCACCGTG
GCGCGGAGCA AGGTGGTCGA CTGGCGTCGC TACGAAGGAC GCCGGCCCGC GCAACCCCTC
GCGCACGACG CCGAGCTGCC CGCCGCACCC CATCCCGCCG ACGCCGCGGA CGACGCCATC
GAGTTGCTGG AAACCCGGGA GGCCTTGCGG CTCATTGGTC AGCTCCCGGC GGAGCAGGCG
GAAATCATCG TGCTCCGCGT CATCGCCGGC CTGGACGTCG ATCAGGTCGC CCGCATCGTC
GGCAAACGAC CCGGGACGGT GCGGGTGGCC TGCCATCGCG GCTTGCGCCG GCTGCACGAC
ATTCTGATCA GCCGCGCCGG TTCCCTGACC GGCGCCGTAC CGCAGGGTGA AAGCCCGAGA
CCGCGAGAGA TACCTCCCTT CGGCGTGGTA GGGCGCGATG CGACCTGA
 
Protein sequence
MRQPMPDPSF AALLQAAQAG EEDAFATLWR DVHPALLRYL RVIAGDAAED LASETWLHVI 
RGLDRFRGDE AGFRGWVFTV ARSKVVDWRR YEGRRPAQPL AHDAELPAAP HPADAADDAI
ELLETREALR LIGQLPAEQA EIIVLRVIAG LDVDQVARIV GKRPGTVRVA CHRGLRRLHD
ILISRAGSLT GAVPQGESPR PREIPPFGVV GRDAT