Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acel_0333 |
Symbol | rpsD |
ID | 4486119 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidothermus cellulolyticus 11B |
Kingdom | Bacteria |
Replicon accession | NC_008578 |
Strand | + |
Start bp | 344495 |
End bp | 345121 |
Gene Length | 627 bp |
Protein Length | 208 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639729100 |
Product | 30S ribosomal protein S4 |
Protein accession | YP_872093 |
Protein GI | 117927542 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0522] Ribosomal protein S4 and related proteins |
TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0897396 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.000428085 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGCTCGGT ACCTCGGAGC GGATTGCAAG CTCTGCCGGC GCGAGAAGAT GAAGCTCTTC CTCAAGGGCT CGAAGTGCGA ATCGCCGAAG TGCCCGATCG AGGAGCGTCC CTACCCGCCG GGTGAGCATG GCCGGACTCG GGCAAAGGAG AGCGAGTACC TCCTTCAGCT GCGCGAGAAG CAGAAGTGCG CGCGGATTTA CGGCGTCCTG GAGAAGCAGT TCCGCCGCTA CTACGAGGAG GCGAGCCGGA AGACCGGCCG CACCGGCGAG AACTTGCTGC GGATCCTGGA GAGCCGGTTG GACAACGTCG TTTATCGTGC CGGGTTCGCC GCGAGTCGCG ACCAGGCGCG GCAGCTGGTC CGGCACGGTC ACTTCCTCGT CAACGGACGG CGGGTGGACA TCCCGAGCTA CCGCGTGAGT GAGAACGACG TCATCGAAGT CGCGGAGAAG TCGCGCGAGC TCACGCCGTT CGTCATTGCC CGGGCGGTAG CCGGTGAGCG TACCGTGCCG CCGTGGCTTG AAGTCATCCC GAACCGGCTG CGGATCCTCG TCCACTCGTT GCCCAGCCGG CAGGTGATCG ACACGCCGGT GCAGGAGCAG CTCATCGTGG AGTTCTACTC GAAGTAA
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Protein sequence | MARYLGADCK LCRREKMKLF LKGSKCESPK CPIEERPYPP GEHGRTRAKE SEYLLQLREK QKCARIYGVL EKQFRRYYEE ASRKTGRTGE NLLRILESRL DNVVYRAGFA ASRDQARQLV RHGHFLVNGR RVDIPSYRVS ENDVIEVAEK SRELTPFVIA RAVAGERTVP PWLEVIPNRL RILVHSLPSR QVIDTPVQEQ LIVEFYSK
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