Gene Acel_0333 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAcel_0333 
SymbolrpsD 
ID4486119 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidothermus cellulolyticus 11B 
KingdomBacteria 
Replicon accessionNC_008578 
Strand
Start bp344495 
End bp345121 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content65% 
IMG OID639729100 
Product30S ribosomal protein S4 
Protein accessionYP_872093 
Protein GI117927542 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0522] Ribosomal protein S4 and related proteins 
TIGRFAM ID[TIGR01017] ribosomal protein S4, bacterial/organelle type 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0897396 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.000428085 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGCTCGGT ACCTCGGAGC GGATTGCAAG CTCTGCCGGC GCGAGAAGAT GAAGCTCTTC 
CTCAAGGGCT CGAAGTGCGA ATCGCCGAAG TGCCCGATCG AGGAGCGTCC CTACCCGCCG
GGTGAGCATG GCCGGACTCG GGCAAAGGAG AGCGAGTACC TCCTTCAGCT GCGCGAGAAG
CAGAAGTGCG CGCGGATTTA CGGCGTCCTG GAGAAGCAGT TCCGCCGCTA CTACGAGGAG
GCGAGCCGGA AGACCGGCCG CACCGGCGAG AACTTGCTGC GGATCCTGGA GAGCCGGTTG
GACAACGTCG TTTATCGTGC CGGGTTCGCC GCGAGTCGCG ACCAGGCGCG GCAGCTGGTC
CGGCACGGTC ACTTCCTCGT CAACGGACGG CGGGTGGACA TCCCGAGCTA CCGCGTGAGT
GAGAACGACG TCATCGAAGT CGCGGAGAAG TCGCGCGAGC TCACGCCGTT CGTCATTGCC
CGGGCGGTAG CCGGTGAGCG TACCGTGCCG CCGTGGCTTG AAGTCATCCC GAACCGGCTG
CGGATCCTCG TCCACTCGTT GCCCAGCCGG CAGGTGATCG ACACGCCGGT GCAGGAGCAG
CTCATCGTGG AGTTCTACTC GAAGTAA
 
Protein sequence
MARYLGADCK LCRREKMKLF LKGSKCESPK CPIEERPYPP GEHGRTRAKE SEYLLQLREK 
QKCARIYGVL EKQFRRYYEE ASRKTGRTGE NLLRILESRL DNVVYRAGFA ASRDQARQLV
RHGHFLVNGR RVDIPSYRVS ENDVIEVAEK SRELTPFVIA RAVAGERTVP PWLEVIPNRL
RILVHSLPSR QVIDTPVQEQ LIVEFYSK